G190099


Basic Information

Item Value
gene id G190099
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 3173060 ~ 3173967 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU225038
acacgttagagAGAATGAGAGTAAAATGGCGGCTGACCCGTAGAAAGCTCGATCGGGTTCATGTTGCAGCATCTTGTAAAAATCCTCCAAGGCTTTTACCTCACCtgcagcctacacacacacacacacacacacacagattttagaattaaattataaaatgaagaTATGCTCTGAATTGTACATAACCCAGATGTTGAGTGACCTTTGTATCAGACAGACGGCTCGTGACGGCCGGATCAGAAAGAACCTCTGGGGAAACAAAATCAAACGTTTAAAATGAAATAGCATTtacatctttaaaaatacagtcAAGATACGCTAGTCTCAGTTTAACTTCTtgaatgtagctaacaagtaaccATAGCTAGAGATAATAATGTTTAAGACCAGAAATCCTCACGCAATTCTTctgtaaatgaaatgaacaaatgatcaaattaacacacagatttaatggtgttttttttttaaccacaaccATACTTGGTGTGCTAAATAAGTGCTAATGCAAACCTTTGAGAGAGTACTTGTGCCCGGATGATGCGTGCACTAGCATGAATTTGGACCTGTTCTCCAGCAGAACCTTGCACTCCTGCCTCACTGCTTCTTTAAAGAGGTACGAGATGAACTGATCCTTAACGAAACCTGGACTCGCCACCAGTATACACTTcaccactgagagagagagagagagagagagagagatgatgaataGAGACGCAGGTTTGATAATAACTTCTAAAAACTGGAGCCTCACCGTCAAAGTTGAAGTGTCTCAGAATTCCCTGCATGACGGCTTCATAGAATCGCTCCAGCGCCTGAAAGGGAAAAAGaagtgttgaattctggattctgattggtcataattttctataaggaaaaagctgcaaatcacagggttatat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU225038 True 908 lncRNA 0.40 1 3173060 3173967

Neighbor

gene id symbol gene type direction distance location
ppp1cab ppp1cab,LOC108274218,LOC108413689,LOC105894037,LOC107556769,LOC107674520 coding downstream 5269 3159988 ~ 3167791 (-)
atp2a1l atp2a1l,LOC108274121,LOC108411009,LOC107716472,LOC107653256 coding downstream 21604 3137134 ~ 3151456 (-)
LOC113547508 LOC108274004 coding downstream 54996 3107185 ~ 3118064 (-)
LOC113547488 doc2a,LOC108274005,LOC108411015,LOC102798681 coding downstream 104919 3033048 ~ 3068141 (-)
LOC113547498 LOC108274359,LOC108274358,LOC108274122 coding downstream 152301 3008265 ~ 3020759 (-)
LOC113547533 paqr4 coding upstream 2937 3176904 ~ 3180468 (-)
cmn NA coding upstream 9103 3183070 ~ 3205679 (-)
patl2 patl2 coding upstream 38891 3212858 ~ 3221523 (-)
LOC113547516 tgfb1i1,tgfi1 coding upstream 48463 3222430 ~ 3233921 (-)
LOC113547469 elob,tceb2,LOC102782282,LOC103367351,LOC100692966,LOC103036770,LOC108427344,LOC102795145 coding upstream 64452 3238419 ~ 3242643 (-)
G190097 NA non-coding downstream 1489 3170883 ~ 3171571 (-)
G190094 NA non-coding downstream 16910 3155911 ~ 3156150 (-)
G190076 NA non-coding downstream 95770 3077031 ~ 3077290 (-)
G190048 LOC108273849,LOC108443156,LOC107684759 non-coding downstream 261805 2911012 ~ 2911255 (-)
G189882 NA non-coding downstream 345253 2796507 ~ 2827807 (-)
G190100 NA non-coding upstream 110 3174077 ~ 3175635 (-)
G190188 NA non-coding upstream 175407 3349374 ~ 3349729 (-)
G190232 NA non-coding upstream 253469 3427436 ~ 3427644 (-)
G190304 NA non-coding upstream 323162 3497129 ~ 3497399 (-)
LOC117598465 NA non-coding upstream 361698 3535665 ~ 3536422 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other downstream 317567 2852055 ~ 2855493 (-)
LOC117598559 NA other downstream 345308 2793046 ~ 2827752 (-)
LOC113547504 LOC108273577,LOC108273573 other downstream 361669 2786081 ~ 2811391 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other downstream 563287 2591237 ~ 2609773 (-)
LOC113547489 NA other downstream 962081 2194344 ~ 2210979 (-)
trnap-cgg_3 NA other upstream 1737767 4911734 ~ 4918977 (-)
G191056 taok2,LOC108273910 other upstream 1775196 4949163 ~ 4952859 (-)
LOC113527048 LOC108274181 other upstream 1885531 5059498 ~ 5063418 (-)
gdpd3b gdpd3 other upstream 2310724 5484691 ~ 5490925 (-)
G191430 NA other upstream 2437153 5611120 ~ 5613954 (-)

Expression


Co-expression Network