G190212


Basic Information

Item Value
gene id G190212
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 3401267 ~ 3405009 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU225191
ATTGGAGAAGACGATCCTCGAGACAGTGACAGTTAATTTTTCAAACAGAGGAGTCCGCCATTTCTGCCCGTTCCCTCAGATTGTGTTGGACCTGGAAGTAATGGCTGAGGATGAGACAGGTTTCCGGGAACACATTAATGCCATCACCCTGGAGTTGCGTAAAAGCAACCCCAGTTACTCTGAGGTCAAGAAGCGGATGAAGAGCACTCTTTTCCAAAGAGTACAGATTATGGAGAGGCCTGCAGCTGAAGTAATGGAGCAGTTTCCTTTTCTTGGAGTGCCACAGCTTaTGCTGCATGAAATGACAATGAGGTTTGGAACAGACTTGGCGAAGAACATGGAAACATCTCTAAATGAAATGGCCCCAAACACCATCAGGAGTTCAAAAGGAggaagtcaaaaaaaaaaactctacgCCAATCTCATTGGACCAGCAGAGGAACCCAAAGCTTCTACACCAACCATAGTGTTCAACTGTAGAGTTTTGTTCTCCTGATCTAACACACTATCATGCTCATTTTATCCTCATCAGCAGTGTGTTAATAAGCTGATCAATTTGAATCAGTGTGTTAGAGCATTTGTCATGTCTTCTACAATTTAATACTACATAATCAAATTTATatttggaaataataataataataataataataataataataataataataataataaaacagacagcattcctgaataaaaataaacacattaacattaatctaataaaactgctttataaataacaaaagtacacatttattaaaacaaatgatgtACATGTGTtaagtatatagtatatttataataatgttagaTATTTTGCTTATTGTCAGCCTGGACTAACAGCGATTTACAAATGTACTATAAGACAAACGCTGGCACAACGATTATATTGCATACATGTTCATATTGGTCGTATTTGGTGGTGAAGCTGTTAAAAGTGATAGGAGACTGTCATCTGGTGGTAGACCGATTCCACTGCATGGTGAATTGTGGAAAATCacaggtgaaaataaatgaaactgaaactgtgaaaatgaatgactcatgaaaaaaaacacataaaataaaaatacaagcacCACATTTCTGAAACATAAcatgtgaagtgtgtaaaaaccaataaaatgtgaatttcatgtgacttttctgtaaaggTGTCGAATATATCTGGAAAAATATGTTTCCAATGATTCTTTTCCCTGGTTCATACCTTTAGTTTTGTGATTCAAGCCATAaagtttcttcattttcagtgtattttaaatttctaaTACAGATTTTGTTAATCATAGTAATGACCTTGTGTATGAGTTACAGACCACTTAGGAATACAGGAAAAGgaaaacttttcatttaaaacgTTGCACTTTGTTTTACAATGTCATAAAAGTGTTCAAATATCAACTTAGATCTGGTTGGAAGCAATAAGGACAGATCTAGTGTAATCTAGACAGCTAGAAATCACACTATTGTAAGATCAAGCAACaagatttaaaatttttgaaCTTATTCAACTTGACTAAGGttacttttaatattaacaatgtGGCAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU225191 True 1559 TUCP 0.34 4 3401267 3405009

Neighbor

gene id symbol gene type direction distance location
LOC113547534 LOC100305049,LOC107084780,LOC108411452,LOC105894045,LOC107567432,LOC107670912,LOC105890759 coding upstream 136045 3261534 ~ 3265222 (+)
LOC113547507 NA coding upstream 147465 3251702 ~ 3253802 (+)
pkmyt1 NA coding upstream 152043 3244122 ~ 3249224 (+)
pelo pelo,LOC107653258,LOC107674509 coding upstream 225615 3169668 ~ 3175652 (+)
sult1st6 LOC108274122,LOC108274358,LOC108274359,LOC108411008 coding upstream 265101 3129716 ~ 3136166 (+)
LOC113547491 LOC108273563 coding downstream 11195 3416204 ~ 3417931 (+)
prdm9 LOC108274183 coding downstream 262144 3667153 ~ 3680599 (+)
pemt pemt coding downstream 326776 3731785 ~ 3772629 (+)
cops3 cops3 coding downstream 429097 3834106 ~ 3849629 (+)
usp22 LOC108274018,LOC108413479,LOC107726266,LOC107719913 coding downstream 445669 3850678 ~ 3885740 (+)
G190170 NA non-coding upstream 33974 3367094 ~ 3367293 (+)
G190160 NA non-coding upstream 48347 3352658 ~ 3352920 (+)
G190122 NA non-coding upstream 135557 3265501 ~ 3265710 (+)
G190033 NA non-coding upstream 166657 3234389 ~ 3234610 (+)
G190027 NA non-coding upstream 178958 3221937 ~ 3222309 (+)
LOC117598604 NA non-coding downstream 72061 3477070 ~ 3482359 (+)
G190258 NA non-coding downstream 72062 3477071 ~ 3477663 (+)
LOC117598607 NA non-coding downstream 72138 3477147 ~ 3477778 (+)
G190277 NA non-coding downstream 103016 3508025 ~ 3508227 (+)
G190279 NA non-coding downstream 105786 3510795 ~ 3511173 (+)
G190028 NA other upstream 162051 3238444 ~ 3239216 (+)
LOC113547538 NA other upstream 379658 2970125 ~ 3021609 (+)
G189864 NA other upstream 640257 2760693 ~ 2761010 (+)
pyyb NA other upstream 872447 2525056 ~ 2528820 (+)
LOC117598558 NA other upstream 1449043 1937687 ~ 1952224 (+)
LOC113547484 LOC108273453 other downstream 25304 3430313 ~ 3453426 (+)
lmf1 lmf1,LOC107580192 other downstream 292785 3697794 ~ 3723243 (+)
rasd1 rasd1,LOC107653935,LOC107720458,LOC108412952 other downstream 376152 3781161 ~ 3783609 (+)
p4ha1a p4ha1,LOC108273903,LOC107753313,LOC107560551 other downstream 498338 3903347 ~ 3930443 (+)
lrrc18b lrrc18 other downstream 1188098 4593107 ~ 4596029 (+)

Expression


Co-expression Network