G190354


Basic Information

Item Value
gene id G190354
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 3693964 ~ 3697421 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU225345
GCTTTTCTTGTGCTCCAGAGCAACCTCCTGGACACCAAGCAGTCACTTCACGGACACTGCTCTGCTTTCCGTCACTGAAGCCTTATGACTAGCAAGATCAACCTCAAGATCATCCTCATCTTAGTTGACATCTCTGCTGCCTTTGACACTGTGAATTGTCAGATCCTCTTGTCAAATCTCTCTAGTTTAGCCATTACCGG

Function

GO:

id name namespace
GO:0045202 synapse cellular_component
GO:0005102 signaling receptor binding molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04723 Retrograde endocannabinoid signaling
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU225345 True 200 lncRNA 0.47 2 3693964 3697421

Neighbor

gene id symbol gene type direction distance location
LOC113539064 NA coding downstream 42940 3648368 ~ 3651024 (-)
neurod2 neurod2 coding downstream 297606 3392544 ~ 3396358 (-)
med1 med1 coding downstream 341415 3330026 ~ 3352549 (-)
LOC113547465 LOC108274351 coding downstream 372342 3278909 ~ 3321622 (-)
LOC113547469 elob,tceb2,LOC102782282,LOC103367351,LOC100692966,LOC103036770,LOC108427344,LOC102795145 coding downstream 451321 3238419 ~ 3242643 (-)
med9 med9 coding upstream 86888 3784309 ~ 3785130 (-)
LOC113539277 nt5m,LOC107719901 coding upstream 118526 3815947 ~ 3830814 (-)
arg1 arg1,LOC108273904 coding upstream 233019 3930440 ~ 3935138 (-)
heatr1 heatr1,LOC107560530,LOC107675669,LOC102797743 coding upstream 240861 3938282 ~ 3971885 (-)
sstr2a sstr2a,LOC108274330,LOC108437322,LOC103031004,LOC107726267,LOC107719927,LOC107653975,LOC107693649 coding upstream 303028 4000449 ~ 4004877 (-)
G190351 NA non-coding downstream 6456 3687306 ~ 3687508 (-)
LOC117598641 NA non-coding downstream 38354 3651026 ~ 3655610 (-)
G190336 NA non-coding downstream 61542 3615420 ~ 3632422 (-)
LOC117598465 NA non-coding downstream 157542 3535665 ~ 3536422 (-)
G190304 NA non-coding downstream 196565 3497129 ~ 3497399 (-)
G190419 NA non-coding upstream 79312 3776733 ~ 3776972 (-)
LOC117598488 NA non-coding upstream 148364 3845785 ~ 3849920 (-)
G190490 NA non-coding upstream 222770 3920191 ~ 3925230 (-)
G190563 NA non-coding upstream 339230 4036651 ~ 4037340 (-)
G190656 NA non-coding upstream 462355 4159776 ~ 4161007 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other downstream 838471 2852055 ~ 2855493 (-)
LOC117598559 NA other downstream 866212 2793046 ~ 2827752 (-)
LOC113547504 LOC108273577,LOC108273573 other downstream 882573 2786081 ~ 2811391 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other downstream 1084191 2591237 ~ 2609773 (-)
LOC113547489 NA other downstream 1482985 2194344 ~ 2210979 (-)
trnap-cgg_3 NA other upstream 1214313 4911734 ~ 4918977 (-)
G191056 taok2,LOC108273910 other upstream 1251742 4949163 ~ 4952859 (-)
LOC113527048 LOC108274181 other upstream 1362077 5059498 ~ 5063418 (-)
gdpd3b gdpd3 other upstream 1787270 5484691 ~ 5490925 (-)
G191430 NA other upstream 1913699 5611120 ~ 5613954 (-)

Expression


Co-expression Network