LOC117598473


Basic Information

Item Value
gene id LOC117598473
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 3980680 ~ 3994201 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU225574
ATTTGGACACCAAGAACGTGAAGTGTGAATATATAATCACGCTGATTGGTGAGATTCTtacataattgttttattttagaaagatttattcaaattattccaCTGAATTCAGTGAATTTCATGCAGAAACTTGTAAAACTAATACAGAAATACCTTGTAATTGCAACAGTTAACTCATCATTTGGTTGTGTACCTACACTTAATCTAGAGTGCTAAGTGGCCATCAATGTGTGAATCACTTGGTTCTTTCACATGGACTGATCAACCATCATCAGCTCTGTTGTCACATTGGATTTTGTGGGTTGGACTGTGAACCATCTCATTTTCTGATCGGATTCTGGGCATTTAAATGAACCACACGTGAATCAGGTCCCTCAGAAGGAAAAAGAGATCGACTGGTAAATTCTCGCTGCAGACTTTGTAGAATAGCAGGCatgtaatgattatatattttcgTGGTAAATATGGCAGGAGAAGATGCAAAGAAGAAGACGACCTATCTGTCTTTTTATCACAATTGATACCCTAACAGTGGCTCTGGCCTTCCTGAATCATTTGGTAAGTGCTATTTGTTGGGGTGGTTTTGGGTGATTCCAGCAACTGAAGATACTTTTTACATCTTATGAAACTAATCTGAATGGGGGAACATCCAATACATTCAAAAGAAAGCACAATTAGATCACTTCAAATAGCAGCACTGATTTACGCTATATTCATAAGTGCTTCTCTTTGGGGCAGTCTCATCTGTGTATTTGACTTTACTGTCTTCTGTGACTACTGCATTTAAAACGTATTTCGATGTGGGTTGGGCTGTGAACCATCTAAGGTCTGGACAGATACTGGAACAACATGTTGCATTGGTAAATTCTCAGTCAAAAGGTTCTACAGTAGCAGATATGTAACGAATGTATACTTTAATCGGGAATTAGTGCAGCTGAAGTTTCAGTGAAGACGACAATCAGCATTATCGTCACAGTTGATACCCTAACAATGGCTCTGACCTGTCTGAATCATTTGGTAAGTGCTATTTGTTGGGGTAGTTTTCAGTGATTTGATCaactgaatgaagaaaaacttttaTCCAGGTTTTATTAAACTACTGATACATGAGATAACATGCAATACTTTCCAATTAAAG
>XR_004579139.1
TATCGTCACAGTTGATACCCTAACAATGGCTCTGACCTGTCTGAATCATTTGGTAAGTGCTATTTGTTGGGGTAGTTTTCAGTGATTTGATCaactgaatgaagaaaaacttttaTCCAGGTTTTATTAAACTACTGATACATGAGATAACATGCAATACTTTCCAATTAAAGCACAATTAGATTACTTCAAACAGAAGCACTGATTTTCATATCATTAATAAGTGCTACTCTTTGGGGCAGTCTCATCTGTGTATCTGACTTTACTAAGTTGTGTGAGAAGTACATCTCTGAATGTTACCCTAATTGTAGCACATTTACTGCAGTTTTAATGTAAGTGCTAACAAGTTGGGGCAACTTTCAGTGAATTTGGACACCAAAAACGTGAAGTGTGAATATATAATCACGCTCATTGTTGAGATTCTaacataattgttttattttagaaagatttattcaaattattccaCTGAATTCAGTGAATTTCATGCAGAAACTTGTAAAACTAATACAGAAATACCTTGTAATTGCAACAGTTAACTCATCATTTGGTTGTGTACCTACACTTAATCTAGAGTGCTAAGTGGCCATCAATGTGTGAATCACTTGGTTCTTTCACATGGACTGATCAACCATCATCAGCTCTGTTGTCACATTGGATTTTGTGGGTTGGACTGTGAACCATCTCATTTTCTGATCAGATTCTGGGCATTTAAATGAACCACACGTGAATCAGGTCCCTCAGAAGGAAAAAGAGATCGACTGGTAAATTCTCGCTGCAGACTTTCTAGAATAGCAGGCatgtaatgattatatattttcgTGGTAAATATGGCAGGAGAAGATGCAAAGAAGAAGACGACCTATCTGTCTTTTTATCACAATTGATACCCTAACAGTGGCTCTGGCCTTCCTGAATCATTTGGTAAGTGCTATTTGTTGGGGTGGTTTTGGGTGATTCCAGCAACTGAAGATACTTTTTACATCTTATGAAACTAATCTGAATGGGGGAACATCCAATACATTCAAAAGAAAGCACAATTAGATCACTTCAAATAGCAGCACTGATTTACGCTATATTCATAAGTGCTTCTCTTTGGGGCAGTCTCATCTGTGTATTTGACTTTACTGTCTTCTGTGACTACTGCATTTAAAACGTATTTCGATGTGGGTTGGGCTGTGAACCATCTAAGGTCTGGACAGATACTGGAACAACATGTTGCATTGGTAAATTCTCAGTCAAAAGGTTCTACAGTAGCAGATATGTAACGAATGTATACTTTAATCAGAAATTAGTGCAGCTGAAGTTTCAGTGAAGACGGCAATCAGCATTATCGTCACAGTTGATACCCTAACAATGGCTCTGACCTGTCTGAATCATTTGGTAAGTGCTATTTGTTGGGGTAGTTTTCAGTGATTTGATCaactgaatgaagaaaaacttttaTCCAGGTTTTATTAAACTACTGATACATGAGATAACATGCAATACTTTCCAATTAAAGCACAATTAGATTACTTCAAACAGAAGCACTGATTTTCATATCATTAATAAGTGCTACTCTTTGGGGCAGTCTCATCTGTGTATCTGACTTTACTAAGTTGTGTGAGAAGTACATCTCTGAATGTTACCCTAATTGTAGCACATTTACTGCAGTTTTAATGTAAGTGCTAACAAGTTGGGGCAACTTTCAGTGAATTTGGACACCAAAAACGTGAAGTGTGAATATATAATCACGCTCATTGTTGAGATTCTaacataattgttttattttagaaagatttattcaaattattccaCTGAATTCAGTGAATTTCATGCAGAAACTTGTAAAACTAATACAGAAATACCTTGTAATTGCAACAGTTAACTCATCATTTGGTTGTGTACCTACACTTAATCTAGAGTGCTAAGTGGCCATCAATGTGTGAATCACTTGGTTCTTTCACATGGACTGATCAACCATCATCAGCTCTGTTGTCACATTGGATTTTGTGGGTTGGACTGTGAACCATCTCATTTTCTGATCGGATTCTGGGCATTTAAATGAACCACACGTGAATCAGGTCCCTCAGAAGGAAAAAGAGATCGACTGGTAAATTCTCGCTGCAGACTTTCTAGAATAGCAGGCatgtaatgattatatattttcgTGGTAAATATGGCAGGAGAAGATGCAAAGAAGAAGACGACCTATCTGTCTTTTTATCACAATTGATACCCTAACAGTGGCTCTGGCCTTCCTGAATCATTTGGTAAGTGCTATTTGTTGGGGTGGTTTTGGGTGATTCCAGCAACTGAAGATACTTTTTACATCTTATGAAACTAATCTGAATGGGGGAACATCCAATACATTCAAAAGAAAGCACAATTAGATCACTTCAAATAGCAGCACTGATTTACGCTATATTCATAAGTGCTTCTCTTTGGGGCAGTCTCATCTGTGTATTTGACTTTACTGTCTTCTGTGACTACTGCATTTAAAACGTATTTCGATGTGGGTTGGGCTGTGAACCATCTAAGGTCTGGACAGATACTGGAACAACATGTTGCATTGGTAAATTCTCAGTCAAAAGGTTCTACAGTAGCAGATATGTAACGAATGTATACTTTAATCGGGAATTAGTGCAGCTGAAGTTTCAGTGAAGACGACAATCAGCATTATCGTCACAGTTGATACCCTAACAATGGCTCTGACCTGTCTGAATCATTTGGTAAGTGCTATTTGTTGGGGTAGTTTTCAGTGATTTGATCaactgaatgaagaaaaacttttaTCCAGGTTTTATTAAACTACTGATACATGAGATAACATGCAATACTTTCCAATTAAAGCACAATTAGATTACTTCAAACAGAAGCACTGATTTTCATATCATTAATAAGTGCTACTCTTTGGGGCAGTCTCATCTGTGTATCTGACTTTACTAAGTTGTGTGAGAAGTACATCTCTGAATGTTACCCTAATTGTAGCACATTTACTGCAGTTTTAATGTAAGTGCTAACAAGTTGGGGCAACTTTCAGTGAATTTGGACACCAAAAACGTGAAGTGTGAATATATAATCACGCTCATTGTTGAGATTCTaacataattgttttattttagaaagatttattcaaattattccaCTGAATTCAGTGAATTTCATGCAGAAACTTGTAAAACTAATACAGAAATACCTTGTAATTGCAACAGTTAACTCATCATTTGGTTGTGTACCTACACTTAATCTAGAGTGCTAAGTGGCCATCAATGTGTGAATCACTTGGTTCTTTCACATGGACTGATCAACCATCATCAGCTCTGTTGTCACATTGGATTTTGTGGGTTGGACTGTGAACCATCTCATTTTCTGATCAGATTCTGGGCATTTAAATGAACCACACGTGAATCAGGTCCCTCAGAAGGAAAAAGAGATCGACTGGTAAATTCTCGCTGCAGACTTTCTAGAATAGCAGGCatgtaatgattatatattttcgTGGTAAATATGGCAGGAGAAGATGCAAAGAAGAAGACGACCTATCTGTCTTTTTATCACAATTGATACCCTAACAGTGGCTCTGGCCTTCCTGAATCATTTGGAGAAGATGCAAAGAAGAAGACGACCTATCTGTCTTTTTATCACAATTGATACCCTAACAGTGGCTCTGGCCTTCCTGAATCATTTGGTAAGTGCTATTTGTTGGGGTGGTTTTGGGTGATTCCAGCAACTGAAGATACTTTTTACATCTTATGAAACTAATCTGAATGGGGGAACATCCAATACATTCAAAAGAAAGCACAATTAGATCACTTCAAATAGCAGCACTGATTTACGCTATATTCATAAGTGCTTCTCTTTGGGGCAGTCTCATCTGTGTATTTGACTTTACTGTCTTCTGTGACTACTGCATTTAAAACGTATTTCGATGTGGGTTGGGCTGTGAACCATCTAAGGTCTGGACAGATACTGGAACAACATGTTGCATTGGTAAATTCTCAGTCAAAAGGTTCTACAGTAGCAGATATGTAACGAATGTATACTTTAATCAGAAATTAGTGCAGCTGAAGTTTCAGTGAAGACGGCAATCAGCATTATCGTCACAGTTGATACCCTAACAATGGCTCTGACCTGTCTGAATCATTTGGTAAGTGCTATTTGTTGGGGTAGTTTTCAGTGATTTGATCaactgaatgaagaaaaacttttaTCCAGGTTTTATTAAACTACTGATACATGAGATAACATGCAATACTTTCCAATTAAAGCACAATTAGATTACTTCAAACAGAAGCACTGATTTTCATATCATTAATAAGTGCTACTCTTTGGGGCAGTCTCATCTGTGTATCTGACTTTACTAAGTTGTGTGAGAAGTACATCTCTGAATGTTACCCTAATTGTAGCACATTTACTGCAGTTTTAATGTAAGTGCTAACAAGTTGGGGCAACTTTCAGTGAATTTGGACACCAAGAACGTGAAGTGTGAATATATAATCACGCTGATTGGTGAGATTCTtacataattgttttattttagaaagatttattcaaattattccaCTGAATTCAGTGAATTTCATGCAGAAACTTGTAAAACTAATACAGAAATACCTTGTAATTGCAACAGTTAACTCATCATTTGGTTGTGTACCTACACTTAATCTAGAGTGCTAAGTGGCCATCAATGTGTGAATCACTTGGTTCTTTCACATGGACTGATCAACCATCATCAGCTCTGTTGTCACATTGGATTTTGTGGGTTGGACTGTGAACCATCTCATTTTCTGATCGGATTCTGGGCATTTAAATGAACCACACGTGAATCAGGTCCCTCAGAAGGAAAAAGAGATCGACTGGTAAATTCTCGCTGCAGACTTTGTAGAATAGCAGGCatgtaatgattatatattttcgTGGTAAATATGGCAGGAGAAGATGCAAAGAAGAAGACGACCTATCTGTCTTTTTATCACAATTGATACCCTAACAGTGGCTCTGGCCTTCCTGAATCATTTGGAGAAGATGCAAAGAAGAAGACGACCTATCTGTCTTTTTATCACAATTGATACCCTAACAGTGGCTCTGGCCTTCCTGAATCATTTGGTAAGTGCTATTTGTTGGGGTGGTTTTGGGTGATTCCAGCAACTGAAGATACTTTTTACATCTTATGAAACTAATCTGAATGGGGGAACATCCAATACATTCAAAAGAAAGCACAATTAGATCACTTCAAATAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU225574 False 1138 lncRNA 0.37 3 3986369 3994201
XR_004579139.1 True 5226 lncRNA 0.37 3 3980680 3988391

Neighbor

gene id symbol gene type direction distance location
dnajc9 dnajc9 coding upstream 80811 3894283 ~ 3899869 (+)
usp22 LOC108274018,LOC108413479,LOC107726266,LOC107719913 coding upstream 94940 3850678 ~ 3885740 (+)
cops3 cops3 coding upstream 131051 3834106 ~ 3849629 (+)
pemt pemt coding upstream 208051 3731785 ~ 3772629 (+)
prdm9 LOC108274183 coding upstream 300081 3667153 ~ 3680599 (+)
LOC113527654 slc39a11 coding downstream 36699 4030900 ~ 4159201 (+)
trnae-cuc_25 NA coding downstream 439040 4433241 ~ 4433312 (+)
LOC113527300 NA coding downstream 549776 4543977 ~ 4547730 (+)
LOC113527299 NA coding downstream 569612 4563813 ~ 4567522 (+)
vstm4b vstm4,LOC108437315 coding downstream 575857 4570058 ~ 4586500 (+)
G190462 NA non-coding upstream 8747 3971060 ~ 3971933 (+)
G190423 NA non-coding upstream 195582 3784232 ~ 3785098 (+)
G190352 NA non-coding upstream 292348 3688098 ~ 3688332 (+)
LOC117598605 NA non-coding upstream 447437 3522966 ~ 3533243 (+)
G190279 NA non-coding upstream 469507 3510795 ~ 3511173 (+)
LOC113527450 NA non-coding downstream 183810 4178011 ~ 4238378 (+)
G190668 NA non-coding downstream 238694 4232895 ~ 4286651 (+)
LOC113527449 NA non-coding downstream 253982 4248183 ~ 4257048 (+)
G190748 NA non-coding downstream 302192 4296393 ~ 4297239 (+)
G190775 NA non-coding downstream 492322 4486523 ~ 4486756 (+)
p4ha1a p4ha1,LOC108273903,LOC107753313,LOC107560551 other upstream 50237 3903347 ~ 3930443 (+)
rasd1 rasd1,LOC107653935,LOC107720458,LOC108412952 other upstream 197071 3781161 ~ 3783609 (+)
lmf1 lmf1,LOC107580192 other upstream 257437 3697794 ~ 3723243 (+)
LOC113547484 LOC108273453 other upstream 527254 3430313 ~ 3453426 (+)
G190212 NA other upstream 575671 3401267 ~ 3405009 (+)
lrrc18b lrrc18 other downstream 598906 4593107 ~ 4596029 (+)
G190865 NA other downstream 760896 4755097 ~ 4839369 (+)
gngt2b NA other downstream 1308876 5303077 ~ 5304909 (+)
LOC113527051 LOC108274342,LOC108274341,LOC108425932 other downstream 1335841 5330042 ~ 5340563 (+)
LOC113527671 LOC108441166,LOC108273636 other downstream 1735953 5730154 ~ 5740905 (+)

Expression


Co-expression Network