G190563


Basic Information

Item Value
gene id G190563
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 4036651 ~ 4037340 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU225612
GTAACAACTGAGAAGAGGATCTGAGAGTTTGCATAACAGTGGTAGGATGCTCAAGAATGAAGCAAAGAGGGAGCaagtataaagaaaataaaattggaCCCAGAATGGAGCCTTGTGGCACTCCACAGGTGATGGGAACTGTGGTCGATGAGAACGCTCCAATTTCCACCGAAAAACTCCTATTTGTAAGATATAACAAACCTCATGCAGATCTAATGTTTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU225612 True 223 lncRNA 0.41 2 4036651 4037340

Neighbor

gene id symbol gene type direction distance location
LOC113527563 LOC108273452,LOC108437319 coding downstream 20338 4013847 ~ 4016313 (-)
sstr2a sstr2a,LOC108274330,LOC108437322,LOC103031004,LOC107726267,LOC107719927,LOC107653975,LOC107693649 coding downstream 31774 4000449 ~ 4004877 (-)
heatr1 heatr1,LOC107560530,LOC107675669,LOC102797743 coding downstream 64766 3938282 ~ 3971885 (-)
arg1 arg1,LOC108273904 coding downstream 101513 3930440 ~ 3935138 (-)
LOC113539277 nt5m,LOC107719901 coding downstream 205837 3815947 ~ 3830814 (-)
sox9a sox9 coding upstream 254611 4291951 ~ 4295240 (-)
LOC113527719 LOC108273413 coding upstream 512768 4550108 ~ 4558134 (-)
mapk8b mapk8b,LOC108274025,LOC108437314,LOC107388204,LOC108263675,LOC103040580 coding upstream 588258 4625598 ~ 4648676 (-)
ubtd1b ubtd1,ubtd1b,LOC108437310 coding upstream 733204 4770544 ~ 4787576 (-)
zdhhc16b LOC108273908,LOC108444288 coding upstream 773312 4810652 ~ 4827352 (-)
G190490 NA non-coding downstream 111421 3920191 ~ 3925230 (-)
LOC117598488 NA non-coding downstream 186731 3845785 ~ 3849920 (-)
G190419 NA non-coding downstream 259679 3776733 ~ 3776972 (-)
G190354 NA non-coding downstream 339230 3693964 ~ 3697421 (-)
G190351 NA non-coding downstream 349143 3687306 ~ 3687508 (-)
G190656 NA non-coding upstream 122436 4159776 ~ 4161007 (-)
G190731 NA non-coding upstream 217153 4254493 ~ 4258754 (-)
G190742 NA non-coding upstream 251077 4288417 ~ 4288803 (-)
G190821 NA non-coding upstream 536342 4573682 ~ 4575530 (-)
G190829 NA non-coding upstream 559199 4596539 ~ 4596823 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other downstream 1181158 2852055 ~ 2855493 (-)
LOC117598559 NA other downstream 1208899 2793046 ~ 2827752 (-)
LOC113547504 LOC108273577,LOC108273573 other downstream 1225260 2786081 ~ 2811391 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other downstream 1426878 2591237 ~ 2609773 (-)
LOC113547489 NA other downstream 1825672 2194344 ~ 2210979 (-)
trnap-cgg_3 NA other upstream 874394 4911734 ~ 4918977 (-)
G191056 taok2,LOC108273910 other upstream 911823 4949163 ~ 4952859 (-)
LOC113527048 LOC108274181 other upstream 1022158 5059498 ~ 5063418 (-)
gdpd3b gdpd3 other upstream 1447351 5484691 ~ 5490925 (-)
G191430 NA other upstream 1573780 5611120 ~ 5613954 (-)

Expression


Co-expression Network