LOC113527450


Basic Information

Item Value
gene id LOC113527450
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 4178011 ~ 4238378 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU225713
GGGGAGGTGAGCGCGAGCGCGAGCGCGGATTTAGTGCTGATTTTTCAGCGTGGAGTTTGTGAACTTGTGCTGCtctttgcactgcactgcttCAGCCTTggatatgcatgtgtgtgagatgtaaagGAGGAAACAGAGGCTGCTGTCATGCTGAAGCTGCAGTGGGAGTGCAGTTTGGAGTTGATTTCCAGGCGCACTGGTGATGAGCTCAGGAAAGAAACCTGAGCCAGGGCATGAGACCACAGCTCAGTGATGTGCTTCACTCTGAAGCGAGGAGAGAGCAGTTTGTCCTGACCAGGAGCTGATGAAATGCAGTCTGTCAGTTTGAATCAACGTACAAAATAACGTCTCTCACTGCATCATCTTGGTGACAATGACGAAGCCCATGCTCTTCACCTCCAAAATCTTGAGCTTGTCTCTGTCCAAAACCACATttcactggacacacacagacacactgcacattttaattCACTGGAAAGATGAAGCTGTCTAGAGAGTGTTTCCTGTCACCACCTTTCAAACTTGTTAAACACATGGCACTTGATGGCAGCAGTTAGGAATGTCGCACTGCTAGTTCTTCATACTGGTGACAGTGGAAtaagagacacacactcactctgtctttctctgcctgtctctctctctttctctctctttctctctctctctctccacacctTCTCTCCATCTGGCTTCTGTTTGTTTGCCTTGATCTGAGCAGTCACGTCTTCTCAAACATGAGGCGGTTGACTACACAGAGGTCCAGATGGCTACACGGGTACAGGAGCACCatactacaaacacacacacacacacacacacacacacacacacacacatgcacgtgcATCACAGCTCTGGGATTAAAAAGATACTATTACAACTGCTATATATACTCACcctccactttaataggaaaaccGGTACActgcttatttatgcagttatccaatcagccaatcatgtggcagcagcacaatgtaaaaactcatgcagatacaggtctagagcttcagttaatggtcacatcagacatcagaatggggaaaaggtGTGAACTCTAAAGGAGTGACTTTAaacgtggcatggatgttggtaccagatgggctggtttgagtatttcatgaactgctgatcttctgggacattgagtgagcaacagttctgtgggtggaaatgtcgtgttgatgagagagatcagagaagaatggccagattggttcga
>XR_003402876.2
TGGAGGAAGGGGAGGTGAGCGCGAGCGCGAGCGCGGATTTAGTGCTGATTTTTCAGCGTGGAGTTTGTGAACTTGTGCTGCtctttgcactgcactgcttCAGCCTTggatatgcatgtgtgtgagatgtaaagGAGGAAACAGAGGCTGCTGTCATGCTGAAGCTGCAGTGGGAGTGCAGTTTGGAGTTGATTTCCAGGCGCACTGGTGATGAGCTCAGGAAAGAAACCTGAGCCAGGGCATGAGACCACAGCTCAGTGATGTGCTTCACTCTGAAGCGAGGAGAGAGCAGTTTGTCCTGACCAGACTGCAGAAGATAATGAGGAAGCACAGTGTGCCATGTTGTCTGCCCTTTGGAGAGAGAGCTGATGAAATGCAGTCTGTCAGTTTGAATCAACGTACAAAATAACGTCTCTCACTGCATCATCTTGGTGACAATGACGAAGCCCATGCTCTTCACCTCCAAAATCTTGAGCTTGTCTCTGTCCAAAACCACATttcactggacacacacagacacactgcacattttaattCACTGGAAAGATGAAGCTGTCTAGAGAGTGTTTCCTGTCACCACCTTTCAAACTTGTTAAACACATGGCACTTGATGGCAGCAGTTAGGAATGTCGCACTGCTAGTTCTTCATACTGGTGACAGTGGAAtaagagacacacactcactctgtctttctctgcctgtctctctctctttctctctctttctctctctctctctccacacctTCTCTCCATCTGGCTTCTGTTTGTTTGCCTTGATCTGAGCAGTCACGTCTTCTCAAACATGAGGCGGTTGACTACACAGAGGTCCAGATGGCTACACGGGTACAGGAGCACCatactacaaacacacacacacacacacacacacacacacacacacacatgcacgtgcATCACAGCTCTGGGATTAAAAAGATACTATTACAACTGCTATATATACTCACcctccactttaataggaaaaccGGTACActgcttatttatgcagttatccaatcagccaatcatgtggcagcagcacaatgtaaaaactcatgcagatacaggtctagagcttcagttaatggtcacatcagacatcagaatggggaaaaggtGTGAACTCTAAAGGAGTGACTTTAaacgtggcatggatgttggtaccagatgggctggtttgagtatttcatgaactgctgatcttctgggacattgagtgagcaacagttctgtgggtggaaatgtcgtgttga

Function

GO:

id name namespace
GO:0007050 cell cycle arrest biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU225713 False 1228 lncRNA 0.47 2 4178019 4238378
XR_003402876.2 True 1255 lncRNA 0.47 3 4178011 4238341

Neighbor

gene id symbol gene type direction distance location
LOC113527654 slc39a11 coding upstream 18810 4030900 ~ 4159201 (+)
dnajc9 dnajc9 coding upstream 278142 3894283 ~ 3899869 (+)
usp22 LOC108274018,LOC108413479,LOC107726266,LOC107719913 coding upstream 292271 3850678 ~ 3885740 (+)
cops3 cops3 coding upstream 328382 3834106 ~ 3849629 (+)
pemt pemt coding upstream 405382 3731785 ~ 3772629 (+)
trnae-cuc_25 NA coding downstream 194863 4433241 ~ 4433312 (+)
LOC113527300 NA coding downstream 305599 4543977 ~ 4547730 (+)
LOC113527299 NA coding downstream 325435 4563813 ~ 4567522 (+)
vstm4b vstm4,LOC108437315 coding downstream 331680 4570058 ~ 4586500 (+)
si:dkey-191m6.4 LOC108274024,LOC108437306 coding downstream 361922 4600300 ~ 4625347 (+)
LOC117598473 NA non-coding upstream 183810 3980680 ~ 3994201 (+)
LOC117598657 NA non-coding upstream 185601 3989433 ~ 3992410 (+)
G190462 NA non-coding upstream 206078 3971060 ~ 3971933 (+)
G190423 NA non-coding upstream 392913 3784232 ~ 3785098 (+)
G190352 NA non-coding upstream 489679 3688098 ~ 3688332 (+)
LOC113527449 NA non-coding downstream 9805 4248183 ~ 4257048 (+)
G190748 NA non-coding downstream 58015 4296393 ~ 4297239 (+)
G190775 NA non-coding downstream 248145 4486523 ~ 4486756 (+)
G190795 NA non-coding downstream 358312 4596690 ~ 4596929 (+)
G190797 NA non-coding downstream 387241 4625619 ~ 4628876 (+)
p4ha1a p4ha1,LOC108273903,LOC107753313,LOC107560551 other upstream 247568 3903347 ~ 3930443 (+)
rasd1 rasd1,LOC107653935,LOC107720458,LOC108412952 other upstream 394402 3781161 ~ 3783609 (+)
lmf1 lmf1,LOC107580192 other upstream 454768 3697794 ~ 3723243 (+)
LOC113547484 LOC108273453 other upstream 724585 3430313 ~ 3453426 (+)
G190212 NA other upstream 773002 3401267 ~ 3405009 (+)
lrrc18b lrrc18 other downstream 354729 4593107 ~ 4596029 (+)
G190865 NA other downstream 516719 4755097 ~ 4839369 (+)
gngt2b NA other downstream 1064699 5303077 ~ 5304909 (+)
LOC113527051 LOC108274342,LOC108274341,LOC108425932 other downstream 1091664 5330042 ~ 5340563 (+)
LOC113527671 LOC108441166,LOC108273636 other downstream 1491776 5730154 ~ 5740905 (+)

Expression


Co-expression Network