G190885


Basic Information

Item Value
gene id G190885
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 4701104 ~ 4750877 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU225963
CACACTGTAAATGATGACTATCAAATAAAAGCTTGGAAAATGACCTTTATTGATAGTGTATAAAAAGAGAACAGTTTATGCGCCTTTCACTAGATGCATCAATATCGCTGTTAATAGGCAATACGAAGTAGAAAGACAATATTACGATGGCTTATTACATCTCACACTGTCAAATAACTGTCACACAGAAGgccaataaaaagaaaatgtggttTGTAGTAAATGAGAGAAATGTTCCTAATTGCCTCATTAAAAACACACTGCTTATTTAGTTAATTATTGTCAAACACAAATTTACATGTAaaagtgcttcttttttttttttttaaacaaaacacaggcACTTTGTCAGATTAAATTAATCACATCTGGGGGAACTACAAAAACAAATTCATATAACAGAttgaaataacaagaaaaataaaaaaaagtagaagagGAGCATAGAAAGGGATTTCTTTGGATCATTACATGCACagtgtcctgtttttctttttttttttttttttttttttttttgat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU225963 True 522 lncRNA 0.29 2 4701104 4750877

Neighbor

gene id symbol gene type direction distance location
mapk8b mapk8b,LOC108274025,LOC108437314,LOC107388204,LOC108263675,LOC103040580 coding downstream 52428 4625598 ~ 4648676 (-)
LOC113527719 LOC108273413 coding downstream 142970 4550108 ~ 4558134 (-)
sox9a sox9 coding downstream 405864 4291951 ~ 4295240 (-)
LOC113527563 LOC108273452,LOC108437319 coding downstream 684791 4013847 ~ 4016313 (-)
sstr2a sstr2a,LOC108274330,LOC108437322,LOC103031004,LOC107726267,LOC107719927,LOC107653975,LOC107693649 coding downstream 696227 4000449 ~ 4004877 (-)
ubtd1b ubtd1,ubtd1b,LOC108437310 coding upstream 19667 4770544 ~ 4787576 (-)
zdhhc16b LOC108273908,LOC108444288 coding upstream 59775 4810652 ~ 4827352 (-)
fam20a fam20a coding upstream 87034 4837911 ~ 4849678 (-)
trnap-cgg_2 NA coding upstream 147897 4898774 ~ 4898845 (-)
trnap-agg_2 NA coding upstream 149089 4899966 ~ 4900037 (-)
G190849 NA non-coding downstream 34533 4666312 ~ 4666571 (-)
G190829 NA non-coding downstream 104281 4596539 ~ 4596823 (-)
G190821 NA non-coding downstream 125574 4573682 ~ 4575530 (-)
G190742 NA non-coding downstream 412301 4288417 ~ 4288803 (-)
G190731 NA non-coding downstream 442350 4254493 ~ 4258754 (-)
G191279 LOC108273947,LOC107720033,LOC107689922,LOC107561997,LOC107693674 non-coding upstream 632118 5382995 ~ 5387137 (-)
G191413 NA non-coding upstream 692085 5442962 ~ 5445167 (-)
G191424 NA non-coding upstream 731743 5482620 ~ 5484667 (-)
G191463 NA non-coding upstream 915296 5666173 ~ 5667846 (-)
G191464 NA non-coding upstream 917007 5667884 ~ 5669753 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other downstream 1845611 2852055 ~ 2855493 (-)
LOC117598559 NA other downstream 1873352 2793046 ~ 2827752 (-)
LOC113547504 LOC108273577,LOC108273573 other downstream 1889713 2786081 ~ 2811391 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other downstream 2091331 2591237 ~ 2609773 (-)
LOC113547489 NA other downstream 2490125 2194344 ~ 2210979 (-)
trnap-cgg_3 NA other upstream 160857 4911734 ~ 4918977 (-)
G191056 taok2,LOC108273910 other upstream 198286 4949163 ~ 4952859 (-)
LOC113527048 LOC108274181 other upstream 308621 5059498 ~ 5063418 (-)
gdpd3b gdpd3 other upstream 733814 5484691 ~ 5490925 (-)
G191430 NA other upstream 860243 5611120 ~ 5613954 (-)

Expression


Co-expression Network