trnap-cgg_3


Basic Information

Item Value
gene id trnap-cgg_3
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 4911734 ~ 4918977 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU226166
GGTTTGGCTCGTTGGTCTAGGGGTATGATTCTCGCTTAGGGTGCGAGAGGTCCCGGGTTCAAATCCCGGACGAGCCCAGGTTTTACATTGAATAGTTTAcctctgattggttaaaactAACGGAACCCTGGGCTGCTGTCTACCTGGTTCTAGCTTGGCTGCTTGGTTCTCGAGAGGTCCAGAAAGGTTGAAATCCCAGCTGAGCCCTTGCTTTTTCTCTCATCTTGTCCTTGTGGAACTGAGGGCCGCGTTGCTCGGACAAACCAGTCACAACGACCAAG
>trnap-cgg_3
GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTAGGGTGCGAGAGGTCCCGGGTTCAAATCCCGGACGAGCCC

Function

GO: NA

KEGG:

id description
ko05034 Alcoholism

RNA

RNA id representative length rna type GC content exon number start site end site
TU226166 True 281 lncRNA 0.52 2 4911734 4918977
trnap-cgg_3 False 72 tRNA 0.61 1 4918901 4918972

Neighbor

gene id symbol gene type direction distance location
trnap-ugg_9 NA coding downstream 2104 4909559 ~ 4909630 (-)
trnap-agg_3 NA coding downstream 3295 4908368 ~ 4908439 (-)
trnap-ugg_8 NA coding downstream 4482 4907183 ~ 4907252 (-)
trnap-ugg_7 NA coding downstream 5669 4905995 ~ 4906065 (-)
trnap-ugg_6 NA coding downstream 6856 4904808 ~ 4904878 (-)
pagr1 pagr1 coding upstream 72965 4991942 ~ 4998332 (-)
g6pc3 g6pc3 coding upstream 337287 5256264 ~ 5265357 (-)
tmem101 tmem101 coding upstream 370735 5289712 ~ 5294398 (-)
trnai-uau_5 NA coding upstream 383136 5302113 ~ 5302205 (-)
LOC113527073 LOC108274342,LOC108274341 coding upstream 393267 5312244 ~ 5322475 (-)
G190885 NA non-coding downstream 160857 4701104 ~ 4750877 (-)
G190849 NA non-coding downstream 245163 4666312 ~ 4666571 (-)
G190829 NA non-coding downstream 314911 4596539 ~ 4596823 (-)
G190821 NA non-coding downstream 336204 4573682 ~ 4575530 (-)
G190742 NA non-coding downstream 622931 4288417 ~ 4288803 (-)
G191279 LOC108273947,LOC107720033,LOC107689922,LOC107561997,LOC107693674 non-coding upstream 464018 5382995 ~ 5387137 (-)
G191413 NA non-coding upstream 523985 5442962 ~ 5445167 (-)
G191424 NA non-coding upstream 563643 5482620 ~ 5484667 (-)
G191463 NA non-coding upstream 747196 5666173 ~ 5667846 (-)
G191464 NA non-coding upstream 748907 5667884 ~ 5669753 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other downstream 2056241 2852055 ~ 2855493 (-)
LOC117598559 NA other downstream 2083982 2793046 ~ 2827752 (-)
LOC113547504 LOC108273577,LOC108273573 other downstream 2100343 2786081 ~ 2811391 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other downstream 2301961 2591237 ~ 2609773 (-)
LOC113547489 NA other downstream 2700755 2194344 ~ 2210979 (-)
G191056 taok2,LOC108273910 other upstream 30186 4949163 ~ 4952859 (-)
LOC113527048 LOC108274181 other upstream 140521 5059498 ~ 5063418 (-)
gdpd3b gdpd3 other upstream 565714 5484691 ~ 5490925 (-)
G191430 NA other upstream 692143 5611120 ~ 5613954 (-)
LOC113527291 LOC108274042 other upstream 849551 5768528 ~ 5791270 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G459447 NA non-coding CI01000321 null 4629578 ~ 4631678 (-)
eurasian perch (Perca fluviatilis) G14788 NA non-coding NC_053113.1 CM020910.1 5919899 ~ 5920686 (+)
mexican tetra (Astyanax mexicanus) trnap-agg_1 NA misc NC_035898.1 CM008301.1 30923812 ~ 30924087 (-)