G191056 (taok2,LOC108273910)


Basic Information

Item Value
gene id G191056
gene name taok2,LOC108273910
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 4949163 ~ 4952859 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU226185
acaaatatattatttaaataattgctGATTCAAAGAATAGACACAGAAAATGTGTAAACAAAGATGAAATGTTCACAAAAAATTACATTCAAAAACAACTGTTATGGCTGAACTACAACTGTGTTTTGTTACTGGTTCACATTTGGTCAAATTTGCTTCTATGTAGCTCAtatcatttaaaatttgtttaaataaaacaaaccttGGTTTGCATCTACTCTTGTACTAATATGTTGGGTCATTccatcttttttaaataaataaaatgcttttttcaaGTTTTAATCAATATTGAGACCATTTAAGATTAGAACAGTGCAAGATagtaagtaataagtaataaagcgTCTTGTTTTTTTCATGGATTTTATGGCTTTAGAGATCTTTGGTATGATTTTGGATCATCGGCACACCCCACAGAGCTGCCATAATGGCTTAGCCTTAGGAAAGTAGCCTTAGCAACTACAAAAACAGCTAAgcaaattatgaaataatttgaTATAAGTAGAATATTTGCTGTCCAACAGTAAATATGTTGTCTTCATATAAAAGTATATGACTAAAATGTTTACATggtaaatcattcattcattcattcagtcatcttcagtaaccgtttatcctggtcagggttgcagtgaatctggagcctatcctgggtgtgaggtgggaatacaccctggctGAGACACCAGTCTATCACAATACatagtaaataattaaacttATTcccaataaaacacaacactatTATTAAGATCATCGTCTTTTTAGCCCTATTTAGCCCAGTACTCAAATCAACCTGAAGGCATTTTCTCATATAGGTATAAATGTAGCCTTAGAGACATGgaacatttctctcagatctGTGCTTATTGGGCTTTAAAATAATGGTTGGACTAATggttcagactttttttttagcttcatTATGTTCTGAGGCAAACATGCAACTGCAATTTCTTTACAAGCTGCATTCAAAACTCACTTGAACCCGTTACTCTTGAGAAGAGAAAGGccaaatgacaaaaacaaaacaaagcgaATTGTTTTAAAGTAAGGCCTAAAACATATCATTATAACACCAAGGCAGCTGTCATTATTACAGCAATCAAAATGGGAATACAGTGATCTCCCAGAGCATGCAAGTAATTTACTATCAAAATTcatagtgttttttgtttgtttgttttgttttttccccagggTTGGGCTAGTGGGGGTTAGGGAAATTGAGGGGAGTGCTCCATagtgtaaaaatgttaaataacagtaCAGTTTTCACAGTGGGTGCTACAGTGACATCTGCATCTTAATAATTGTAGCTATGGCTTCAGAATTAGGCCTATAGCATCAGTCTCTGACTGCCCTTTTGAAATAAGATGTAATGCTAGCAACTTTTCTGAAATCCTTCACAAGCACACCAACACAAAAGGgaagggtgaaaaaaaaattgcacaaacATGGTCATGAAATAATAACCATAAGACATACTTCTTAGTAATTAAGAACAAAAAATTCAATGATTAAAATTAAGACAGTAAAACTTTTACAAAAAGCACAATCTTGATTAATACTTTATATTCACTGATTGATGGATAGTGAATATGGGAGTTGGACAGACAGGATGTAATGGGGTGATTTAAAGCCAGTAAACATATGAGGCTCAATCTGAGCGTGCAAAATGTATGGAAAAATACATAAGAATGCACAGCATGAATGATCAGTcactcacacagacagcaaATACTTTGGCAATTCCTTTGTTCACTCTCCTGGTAATGCAATTGCCATGTTTTCTATCTACCTCCATGGCACAATCTTCCCCCTCATGCTCCTTCCTGAGGATGTCCTCCTCAGCCCACTCTCCCACCTCCCTTCCTCTCTGTGCATCATCTCCCGCTCCCTTCTTcgtcgctccctctctctcctctccctcatCCTGCGCTTCTGTTCCCTCACTTCACGTGGTAGGAGTCGGGGCAGCCTGCTCGGTTTCTCTTCCCTTAAAAGCCCTAAAGCCCTCAATCTACACAGGTAATGTGGAGGAAGCTCTTTAAGTATTCGGTTTGCTAAACGCAGCACTAGCGAATTAGCCAGATCTGCTAAAACGCCCAAGGGACGCCGAGCAAAGCGTTTGACCCAAACGTAAACCCAAGACTCATGCTTAGCCTGGAACTCGGTACGTAGGGTCCGGGCAGGAACAGGTATGCGGGAGTGCCTTCCACCACAATTACGTCCTGCTTTGGGAAACATATCAAAGAGGCTGCGCTCAGCCATGCCACCCGTGAGTGACTGGCACAGAGTGAACAGTGGCTTTGGTAGACGGAAAAGCAGACGCACCCAGAATCGGGCAAGCTTTCGGGCGCATTCTGGAGGAAGACACGCGCTGGACGCACCACCAGCACCAACACCAAgtagagagaaaggaagagtgAGGGCGAGCTGAGGAAGAAAGCCGAGATCAGGGCCAAAGGAACGTAATAGAGGCCCAGACTCAGTGCCAGGCCCATACTGAACAGCCCCGATGCCCAGAGCACGAGTGAGAAAaatgcagaaagagagagtgaccAGAGTGAGCGAAGGAATAGgtaagagaaaaagagagccaAGAAGGCTAGCTCAGCTGAAAGAACCAGGGATGCAAGGgagggaagaggaggagagcggCGAAGGGAGAGAAGGAAgatagagaggaagaggagggttGGGAAGGATGGTTTGGCTGctgcagagagggagaggacaAGACATATGGTGTGAGAAAAGAGTGAAGGGATGGATGGTTGAGAACTGGGGGTGCTGGGAGGAGGGCAAATAGGAGGAGGTTCCAGTTCATCTAGAGTGTCAGGGAAGTAGAATTCAGAGAGCTCATCTCGTTGAGGGATTTCAAGAGAAGAGGAAGGGATAAGCTCTGATGGACAGCCATCAGCCACGCCTCTACCCTCTTCTCCCTCTTCCTCAGTCTCTACCTCCGTCTCACTGCTTGCATCCTCCTCCTTATCCCACTGCAGCCCTTCTACTAGTCTTTGATCCCCTAAACCTTTGTCTTCCACTCTCTCCTCCAACTGCCATTCTTTATTCTCTCCCCCCAAATCATGGCACTTCTCCTTCTGCTCatctatgttttcttctttggCATGTTCAAATAGCATAACCTcctcttctgtctctccatcagcctctttctctctgccatGCTCATCTAAAGGCTGCAAATAGCTTCCTTCatCAACTTTTACACTCTCTGCCTCCTGTGCACTCTTTTCCACAGGTGGAGTGTGCGCCCCACAGAACATGCTCCCATCCTCTTCCCTCTCTACTCCCTCAAAAACCTCTTCTGCCCTTTCCTTTACCAGCCCACTGCATGAACTCTCAATCCCTTCCCCATGTCCGTCAGGACCCTCTCCACTGCTCTCTGTGCTGTCACGCTCACTCACTCTTAGGCTCTTTGGCTGCTGACGGACTTCGACAGCATGTTTCTGGCGCAACTCCTGTTCACGCCGCTTGTTGTATTCGAGCTGGTTGGTGAGTTCACTCTGGTGCTGTGTGCGTATCAGCTCTGCCCGAGTTCTCTGCACCAGACCCAGCTGACGCAGCTCTAGCTCTTGTGTGGACTCATGGTGCCGCAGCAGCATTGCACACTCCAGGTCCTTCAGTGTCTGTTTCTTAT

Function

symbol description
taok2 Enables mitogen-activated protein kinase kinase binding activity; neuropilin binding activity; and protein serine/threonine kinase activity. Involved in several processes, including focal adhesion assembly; intracellular signal transduction; and positive regulation of JNK cascade. Located in cytoplasmic vesicle; cytosol; and nuclear lumen. Part of receptor complex.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU226185 True 3673 TUCP 0.44 2 4949163 4952859

Neighbor

gene id symbol gene type direction distance location
trnap-agg_4 NA coding downstream 31276 4917816 ~ 4917887 (-)
trnap-ugg_13 NA coding downstream 33587 4915505 ~ 4915576 (-)
trnap-ugg_12 NA coding downstream 34777 4914316 ~ 4914386 (-)
trnap-ugg_11 NA coding downstream 35966 4913126 ~ 4913197 (-)
trnap-ugg_10 NA coding downstream 37155 4911938 ~ 4912008 (-)
pagr1 pagr1 coding upstream 39083 4991942 ~ 4998332 (-)
g6pc3 g6pc3 coding upstream 303405 5256264 ~ 5265357 (-)
tmem101 tmem101 coding upstream 336853 5289712 ~ 5294398 (-)
trnai-uau_5 NA coding upstream 349254 5302113 ~ 5302205 (-)
LOC113527073 LOC108274342,LOC108274341 coding upstream 359385 5312244 ~ 5322475 (-)
G190885 NA non-coding downstream 198286 4701104 ~ 4750877 (-)
G190849 NA non-coding downstream 282592 4666312 ~ 4666571 (-)
G190829 NA non-coding downstream 352340 4596539 ~ 4596823 (-)
G190821 NA non-coding downstream 373633 4573682 ~ 4575530 (-)
G190742 NA non-coding downstream 660360 4288417 ~ 4288803 (-)
G191279 LOC108273947,LOC107720033,LOC107689922,LOC107561997,LOC107693674 non-coding upstream 430136 5382995 ~ 5387137 (-)
G191413 NA non-coding upstream 490103 5442962 ~ 5445167 (-)
G191424 NA non-coding upstream 529761 5482620 ~ 5484667 (-)
G191463 NA non-coding upstream 713314 5666173 ~ 5667846 (-)
G191464 NA non-coding upstream 715025 5667884 ~ 5669753 (-)
trnap-cgg_3 NA other downstream 30186 4911734 ~ 4918977 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other downstream 2093670 2852055 ~ 2855493 (-)
LOC117598559 NA other downstream 2121411 2793046 ~ 2827752 (-)
LOC113547504 LOC108273577,LOC108273573 other downstream 2137772 2786081 ~ 2811391 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other downstream 2339390 2591237 ~ 2609773 (-)
LOC113527048 LOC108274181 other upstream 106639 5059498 ~ 5063418 (-)
gdpd3b gdpd3 other upstream 531832 5484691 ~ 5490925 (-)
G191430 NA other upstream 658261 5611120 ~ 5613954 (-)
LOC113527291 LOC108274042 other upstream 815669 5768528 ~ 5791270 (-)
itga3b itga3 other upstream 1594082 6546941 ~ 6594390 (-)

Expression


Co-expression Network