LOC113527048 (LOC108274181)


Basic Information

Item Value
gene id LOC113527048
gene name LOC108274181
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 5059498 ~ 5063418 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU226226
cacacacacacacaagcgctcGCGAAAGCATGGCTGACCAGGAAGGTAAAGGTAAACCTGAAGGCGAGTTTGCCAGGAGGATAGACCCTACCAAGGAGAGTCTGACACGAGAGCAGCTGCAGTTCATCCGGCAAGCGGAACTTGCTCAGTGGAGGAAGAAGAGCCAAAAACTCCGCACCAGAAATGTCATAACTGGACTCGCCATTGGAGCCCTAGTGATGGGAATATATGGGTATACATTCTACTCTGTGTCTCAAGAAAGGATCATGGATGAGATAGATGAAGAAGCAAAGGTGGCTGCCAGGATGCGAAACTCAAAGACTGGAGCGAACTAACTAAAATTAGAATTGGTTGCCAAAAGATGTTTTGCACTGTGGTTTGCACCAATGAAAGgcaaccgtttttttttttttttttttgggcctATTCTCAAATGGCTCCCTGCCAGAATGGAGCCATTTGAGACTCAGCAATAGATTCTTCAAGACTACCAGATGCTCCTCTGTTCATTCATGAAGATTTGTATAAGAAAGCCACAGACTGGAAGAACAATTATGTCTTGAATGAAAATTACAGTCAATAATTGTGAGGAAATTGAATCAATGTACCACAAGAGGGCACTGCTAAACCTTCTGCTCCATGGAAAGTGAGTGTTCTCTGACACAGGGTTCAGCGCTGCATagacctttggccatataatggaaaaaaatgttgatgaaAAGTTTAAATGGTAAATAATATTAAGCTgtaaaggttttgttttttgcaaccTAAATA
>XM_026914518.2
TGACGCGACTTTGAccgctaaaacacacacacacacaagcgctcGCGAAAGCATGGCTGACCAGGAAGGTAAAGGTAAACCTGAAGGCGAGTTTGCCAGGAGGATAGACCCTACCAAGGAGAGTCTGACACGAGAGCAGCTGCAGTTCATCCGGCAAGCGGAACTTGCTCAGTGGAGGAAGAAGAGCCAAAAACTCCGCACCAGAAATGTCATAACTGGACTCGCCATTGGAGCCCTAGTGATGGGAATATATGGGTATACATTCTACTCTGTGTCTCAAGAAAGGATCATGGATGAGATAGATGAAGAAGCAAAGGTGGCTGCCAGGATGCGAAACTCAAAGACTGGAGCGAACTAACTAAAATTAGAATTGGTTGCCAAAAGATGTTTTGCACTGTGGTTTGCACCAATGAAAGgcaaccgtttttttttttttttttttgggcctATTCTCAAATGGCTCCCTGCCTCATCTATAAGTGAACTACATAGAGAATGAAATAATTCTATATCTTTGTTATCAGGCTGCCCATTACTTATTTCTGGAGATGTgcagacgttttttttttccagtacaCTTAGCCTTAATATTCAGATGTCACATAAAGTGTTGATTATGTGTGGTCTATTTTAACAAGTCTAAACTAGGTGTGTATACTAAACACTTGTGTAAAAACTACCATTCCTTGGCTACAAACTACACCATGGGTCTTtagtcttatccacaaaggtTTGACGTACATTTAAaattacggcatttggcagacgcccttatccagagcgttttagattattttcatgtatacagctgagcagttgagggttaaggaccttgctcaagggcccagcagtggcagcttggcagcgCTGGGATTTGAGCTCATGAACTTCCTATCGGTAGTCCATCTTAACCACTGTGGTTTTTCATTCTGATCAAGCAGGAACACACTTTCTGGATAAGGTTGAAGATCCCTGAACTAGTTAGCCTTATTAGAACTGATTATATTATCTAATAAGAACATTAACTAGACATGAATTCTAGTGTTTGAGGTACAGCATAAATTTCCTGGAGCAGAATAGGACTGCAATGAGCCAGTGCAAAACTCTGTCCAGAATGGAGCCATTTGAGACTCAGCAATAGATTCTTCAAGACTACCAGATGCTCCTCTGTTCATTCATGAAGATTTGTATAAGAAAGCCACAGACTGGAAGAACAATTATGTCTTGAATGAAAATTACAGTCAATAATTGTGAGGAAATTGAATCAATGTACCACAAGAGGGCACTGCTAAACCTTCTGCTCCATGGAAAGTGAGTGTTCTCTGACACAGGGTTCAGCGCTGCATagacctttggccatataatggaaaaaaatgttgatgaaAAGTTTAAATGGTAAATAATATTAAGCTgtaaaggttttgttttttgcaaccTAAATAAATGTCTGATATTTGCCATATCTTGCAAA

Function

GO:

id name namespace
GO:0070131 positive regulation of mitochondrial translation biological_process
GO:0033617 mitochondrial cytochrome c oxidase assembly biological_process
GO:0031305 integral component of mitochondrial inner membrane cellular_component

KEGG:

id description
K18175 CCDC56, COA3; cytochrome c oxidase assembly factor 3, animal type

RNA

RNA id representative length rna type GC content exon number start site end site
TU226226 False 777 TUCP 0.42 3 5059527 5063395
XM_026914518.2 True 1471 mRNA 0.41 2 5059498 5063418

Neighbor

gene id symbol gene type direction distance location
pagr1 pagr1 coding downstream 61166 4991942 ~ 4998332 (-)
trnap-agg_4 NA coding downstream 141611 4917816 ~ 4917887 (-)
trnap-ugg_13 NA coding downstream 143922 4915505 ~ 4915576 (-)
trnap-ugg_12 NA coding downstream 145112 4914316 ~ 4914386 (-)
trnap-ugg_11 NA coding downstream 146301 4913126 ~ 4913197 (-)
g6pc3 g6pc3 coding upstream 192846 5256264 ~ 5265357 (-)
tmem101 tmem101 coding upstream 226294 5289712 ~ 5294398 (-)
trnai-uau_5 NA coding upstream 238695 5302113 ~ 5302205 (-)
LOC113527073 LOC108274342,LOC108274341 coding upstream 248826 5312244 ~ 5322475 (-)
sgca LOC108273949,LOC108444285 coding upstream 341764 5405182 ~ 5416607 (-)
G190885 NA non-coding downstream 308621 4701104 ~ 4750877 (-)
G190849 NA non-coding downstream 392927 4666312 ~ 4666571 (-)
G190829 NA non-coding downstream 462675 4596539 ~ 4596823 (-)
G190821 NA non-coding downstream 483968 4573682 ~ 4575530 (-)
G190742 NA non-coding downstream 770695 4288417 ~ 4288803 (-)
G191279 LOC108273947,LOC107720033,LOC107689922,LOC107561997,LOC107693674 non-coding upstream 319577 5382995 ~ 5387137 (-)
G191413 NA non-coding upstream 379544 5442962 ~ 5445167 (-)
G191424 NA non-coding upstream 419202 5482620 ~ 5484667 (-)
G191463 NA non-coding upstream 602755 5666173 ~ 5667846 (-)
G191464 NA non-coding upstream 604466 5667884 ~ 5669753 (-)
G191056 taok2,LOC108273910 other downstream 106639 4949163 ~ 4952859 (-)
trnap-cgg_3 NA other downstream 140521 4911734 ~ 4918977 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other downstream 2204005 2852055 ~ 2855493 (-)
LOC117598559 NA other downstream 2231746 2793046 ~ 2827752 (-)
LOC113547504 LOC108273577,LOC108273573 other downstream 2248107 2786081 ~ 2811391 (-)
gdpd3b gdpd3 other upstream 421273 5484691 ~ 5490925 (-)
G191430 NA other upstream 547702 5611120 ~ 5613954 (-)
LOC113527291 LOC108274042 other upstream 705110 5768528 ~ 5791270 (-)
itga3b itga3 other upstream 1483523 6546941 ~ 6594390 (-)
ipmkb ipmk other upstream 2336582 7400000 ~ 7418378 (-)

Expression


Co-expression Network