G191267


Basic Information

Item Value
gene id G191267
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 5366136 ~ 5366358 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU226421
AAAGGTTTCAGGCATAGGAAACGTCTGCTTAGTTGTGCACGAATCCTGTTATGTTGTGTTTGGTGATCCAATGAAGTTGGTGTTAAAGAACTGACAGTGCTGCATGTAGAGATTTTGGGATGTAAAGAAGAAATGAGACATGCAAAACTGAGCAAAGATGTTATGATCACggtaaaataaaaatcccacACACCTGAACAAAGGCCCAGAGCCACCATTTGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU226421 True 223 lncRNA 0.40 1 5366136 5366358

Neighbor

gene id symbol gene type direction distance location
lsm12b lsm12,LOC107708984,LOC107562026,LOC107693683 coding upstream 81986 5267793 ~ 5284150 (+)
tanc2b tanc2b,LOC108274047,LOC107562025,LOC107708983 coding upstream 115624 5077518 ~ 5250512 (+)
cntd1 cntd1 coding upstream 295913 5063595 ~ 5070223 (+)
wnk4a wnk4 coding upstream 306698 5010587 ~ 5059438 (+)
vps25 vps25 coding upstream 360215 4998891 ~ 5005921 (+)
col1a1b LOC108273947,LOC107708989,LOC107693674 coding downstream 16653 5383011 ~ 5404806 (+)
rfng rfng coding downstream 56441 5422799 ~ 5434479 (+)
dcxr dcxr coding downstream 69901 5436259 ~ 5443878 (+)
cabp5a cabp5a,LOC108273649,LOC108425940,LOC107562016,LOC107708978,LOC107693687,LOC108246804 coding downstream 97847 5464205 ~ 5470108 (+)
nif3l1 nif3l1 coding downstream 110973 5477331 ~ 5484677 (+)
G191266 NA non-coding upstream 2633 5363288 ~ 5363503 (+)
G191258 NA non-coding upstream 56762 5308219 ~ 5309374 (+)
G191032 NA non-coding upstream 83493 5269247 ~ 5282643 (+)
G191026 g6pc3 non-coding upstream 104051 5256441 ~ 5262085 (+)
G190964 LOC108274181 non-coding upstream 302717 5059517 ~ 5063419 (+)
G191273 NA non-coding downstream 16239 5382597 ~ 5382809 (+)
G191310 NA non-coding downstream 146333 5512691 ~ 5513155 (+)
G191375 NA non-coding downstream 230364 5596722 ~ 5667602 (+)
G191329 aldoa,aldoab,LOC107581735 non-coding downstream 248049 5614407 ~ 5619108 (+)
G191386 NA non-coding downstream 304656 5671014 ~ 5671252 (+)
LOC113527051 LOC108274342,LOC108274341,LOC108425932 other upstream 25573 5330042 ~ 5340563 (+)
gngt2b NA other upstream 61227 5303077 ~ 5304909 (+)
G190865 NA other upstream 526767 4755097 ~ 4839369 (+)
lrrc18b lrrc18 other upstream 770107 4593107 ~ 4596029 (+)
p4ha1a p4ha1,LOC108273903,LOC107753313,LOC107560551 other upstream 1435693 3903347 ~ 3930443 (+)
LOC113527671 LOC108441166,LOC108273636 other downstream 363796 5730154 ~ 5740905 (+)
G191581 NA other downstream 603385 5969743 ~ 5983237 (+)
LOC113527389 NA other downstream 1358963 6725321 ~ 6728391 (+)
asah2 asah2,LOC107598643 other downstream 1456382 6822740 ~ 6836383 (+)
tfam tfam other downstream 2062187 7428545 ~ 7436372 (+)

Expression


Co-expression Network