G191386


Basic Information

Item Value
gene id G191386
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 5671014 ~ 5671252 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU226560
TTACACAGTTACTTGAAAATATAGTAATATTCACTCATTTTTTATGAAATTGCCTTACctgaataatattattatgcatttgcattattattagaaaaatgGTATTTTAGCTTCCAGGCTTACATAGGTGAAGACCCTACAACACTGGTTCCCAAACTTTCTGAGGAAacgaccccaaatggacattatgaattttctgggaccccaagccttgaccaccctacaattttttaaattcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU226560 True 239 lncRNA 0.34 1 5671014 5671252

Neighbor

gene id symbol gene type direction distance location
LOC113527309 LOC108274209,LOC108273638 coding upstream 5047 5626391 ~ 5665967 (+)
tbx6 tbx6 coding upstream 171269 5494906 ~ 5499745 (+)
nif3l1 nif3l1 coding upstream 186337 5477331 ~ 5484677 (+)
cabp5a cabp5a,LOC108273649,LOC108425940,LOC107562016,LOC107708978,LOC107693687,LOC108246804 coding upstream 200906 5464205 ~ 5470108 (+)
dcxr dcxr coding upstream 227136 5436259 ~ 5443878 (+)
mapk7 mapk7 coding downstream 10789 5682041 ~ 5689581 (+)
mmp25b LOC108273420 coding downstream 75621 5746873 ~ 5766384 (+)
kansl1a LOC108274073 coding downstream 269697 5940949 ~ 5964560 (+)
scn4aa scn4a,scn4aa,LOC108435052,LOC107598592,LOC107708946,LOC107732174,LOC107664628,LOC107654028 coding downstream 352515 6023767 ~ 6061324 (+)
cd79b NA coding downstream 398167 6069419 ~ 6074090 (+)
G191375 NA non-coding upstream 3412 5596722 ~ 5667602 (+)
G191329 aldoa,aldoab,LOC107581735 non-coding upstream 51906 5614407 ~ 5619108 (+)
G191310 NA non-coding upstream 157859 5512691 ~ 5513155 (+)
G191273 NA non-coding upstream 288205 5382597 ~ 5382809 (+)
G191267 NA non-coding upstream 304656 5366136 ~ 5366358 (+)
G191387 NA non-coding downstream 890 5672142 ~ 5672495 (+)
G191472 NA non-coding downstream 51577 5722829 ~ 5723604 (+)
G191497 NA non-coding downstream 101648 5772900 ~ 5776010 (+)
G191568 NA non-coding downstream 235212 5906464 ~ 5908176 (+)
G191588 NA non-coding downstream 269369 5940621 ~ 5940847 (+)
LOC113527051 LOC108274342,LOC108274341,LOC108425932 other upstream 330451 5330042 ~ 5340563 (+)
gngt2b NA other upstream 366105 5303077 ~ 5304909 (+)
G190865 NA other upstream 831645 4755097 ~ 4839369 (+)
lrrc18b lrrc18 other upstream 1074985 4593107 ~ 4596029 (+)
p4ha1a p4ha1,LOC108273903,LOC107753313,LOC107560551 other upstream 1740571 3903347 ~ 3930443 (+)
LOC113527671 LOC108441166,LOC108273636 other downstream 58902 5730154 ~ 5740905 (+)
G191581 NA other downstream 298491 5969743 ~ 5983237 (+)
LOC113527389 NA other downstream 1054069 6725321 ~ 6728391 (+)
asah2 asah2,LOC107598643 other downstream 1151488 6822740 ~ 6836383 (+)
tfam tfam other downstream 1757293 7428545 ~ 7436372 (+)

Expression


Co-expression Network