gdpd3b (gdpd3)


Basic Information

Item Value
gene id gdpd3b
gene name gdpd3
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 5484691 ~ 5490925 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU226605
CCTCAGTGCAGTGGATGTGGGAACTGAGATGTTGGAAGTGGACTGTCATTTAACTCTAGACGGTTATGTTGTGGTGTGCCATGACAAAAACcttgaaagacagacaggatgTGACGTGGACGTCTCTTTGGTTAAATATCAGgaCTTGCCACTCTATAGAGAGAAGCTTGAGGTCACATTCAATGCTGGTAAGTTAGTCC
>XM_026915826.2
CCGGTAAAGATAAATTAACCTGTTGCTCAGTTTCTGAATCATTTCAGCAAAACAGCGTACTAGTACACACTATGGAGGCTGTGGTGGGCATTGGGGTGTTGGTCGTGGCTGTAGGATTTTATATCTTATGCTCTGTGTATCTGCTGTGTAACCCACTTATTCTCCACAAGAAGAAATATTTATCCTTTCACAGCAGACACATTTCTCACAGAGGTGGTGCGGGTGAGAGGATAGAAAATACCATGGAGGCTTTTACACATGCAGTGGATGTGGGAACTGAGATGTTGGAAGTGGACTGTCATTTAACTCTAGACGGTTATGTTGTGGTGTGCCATGACAAAAACcttgaaagacagacaggatgTGACGTGGACGTCTCTTTGGTTAAATATCAGgaCTTGCCACTCTATAGAGAGAAGCTTGAGGTCACATTCAATGCTGGGCAATTCAGTACGGGGAAGGACCGGAGAATCGCCCTGCTGGAGGACGTCTTCAAGAAATTCCCCCAAATGCCAATCAACATCGAGGTTAAACAAAACAATGATCTGCTGATACAAAAGGTCTCCTCCCTGGTGAAAGAGTATGGCAGGGACAACATCACTGTCTGGGCCTCTGAAGACTCTCAAATCATGGCAAAATGCAGGAAACAGAATCCCTTCATGCCATACAGCTTCACCATCAGACGAGGAATCCTTCTTCTAGCACTCTACTACACTGGCCTTCTGCCCTTCTGCCCTCTGGGAGAAAGTCTATTGCAGTTCTACCTGCCCAGAGTAATCAACAGGAGTTATATTCCAGAAGAGTCTTTCCTTAAGAAAAGATTTGTGGTCTCGCTCATTGAAAAGCTGACTATGAGAAAGTCTTTGTTTGAGCACTTGGAGAAGCGAGGCATGCAGGTGCAGTTGTTTGTGTGTAACAAGGAGAAGGACATGGCTGCGGCTTTCGGATTCGGTGCTACAGGAGTGATGTCTGATTATCCCACCATCCTATCAGACTACCTGCAAAAACATCCGGCTGTTTAAGTTTCTTACTGCAAAGATGTGACAACAAAAA

Function

symbol description
gdpd3 Enables phosphoric diester hydrolase activity. Involved in N-acylethanolamine metabolic process. Located in endoplasmic reticulum.

NR:

description
PREDICTED: glycerophosphodiester phosphodiesterase domain-containing protein 3-like

GO: NA

KEGG:

id description
K22387 GDPD1_3, GDE4_7; lysophospholipase D

RNA

RNA id representative length rna type GC content exon number start site end site
TU226605 False 200 lncRNA 0.45 2 5488817 5489111
XM_026915826.2 True 1053 mRNA 0.45 10 5484691 5490925

Neighbor

gene id symbol gene type direction distance location
trnav-uac_7 NA coding downstream 11221 5473398 ~ 5473470 (-)
lrrc45 lrrc45,LOC107736618 coding downstream 28332 5446472 ~ 5456359 (-)
sgca LOC108273949,LOC108444285 coding downstream 68084 5405182 ~ 5416607 (-)
LOC113527073 LOC108274342,LOC108274341 coding downstream 162216 5312244 ~ 5322475 (-)
trnai-uau_5 NA coding downstream 182486 5302113 ~ 5302205 (-)
prodh2 prodh2,zgc:92040 coding upstream 11498 5502423 ~ 5509397 (-)
eif3c LOC100304733,LOC107693689,LOC107708970,LOC107562013,LOC107689927,LOC107571764 coding upstream 21842 5512767 ~ 5526387 (-)
ppp4cb ppp4c,ppp4cb,LOC105024361,LOC107590569,LOC107690278 coding upstream 37724 5528649 ~ 5539726 (-)
si:ch211-136m16.8 NA coding upstream 49961 5540886 ~ 5545885 (-)
LOC117598535 NA coding upstream 54916 5545841 ~ 5554907 (-)
G191424 NA non-coding downstream 24 5482620 ~ 5484667 (-)
G191413 NA non-coding downstream 39524 5442962 ~ 5445167 (-)
G191279 LOC108273947,LOC107720033,LOC107689922,LOC107561997,LOC107693674 non-coding downstream 97554 5382995 ~ 5387137 (-)
G190885 NA non-coding downstream 733814 4701104 ~ 4750877 (-)
G190849 NA non-coding downstream 818120 4666312 ~ 4666571 (-)
G191463 NA non-coding upstream 175248 5666173 ~ 5667846 (-)
G191464 NA non-coding upstream 176959 5667884 ~ 5669753 (-)
G191468 NA non-coding upstream 197669 5688594 ~ 5689568 (-)
G191490 NA non-coding upstream 249053 5739978 ~ 5740199 (-)
LOC113527731 NA non-coding upstream 444614 5935539 ~ 5938213 (-)
LOC113527048 LOC108274181 other downstream 421273 5059498 ~ 5063418 (-)
G191056 taok2,LOC108273910 other downstream 531832 4949163 ~ 4952859 (-)
trnap-cgg_3 NA other downstream 565714 4911734 ~ 4918977 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other downstream 2629198 2852055 ~ 2855493 (-)
LOC117598559 NA other downstream 2656939 2793046 ~ 2827752 (-)
G191430 NA other upstream 120195 5611120 ~ 5613954 (-)
LOC113527291 LOC108274042 other upstream 277603 5768528 ~ 5791270 (-)
itga3b itga3 other upstream 1056016 6546941 ~ 6594390 (-)
ipmkb ipmk other upstream 1909075 7400000 ~ 7418378 (-)
ccdc6b ccdc6,ccdc6b,LOC107695538,LOC107654058,LOC107727062,LOC107746455 other upstream 2090425 7581350 ~ 7595881 (-)

Expression


Co-expression Network