G191430


Basic Information

Item Value
gene id G191430
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 5611120 ~ 5613954 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU226617
GCATAGCCAATTATGTTAGTCACTAGAATCGAttctagtctaacctggcattaccAATGAAAACAGGCTAATTTAGTTAAATATAActagttattatttaaattagcaAAAGAGCTAATGTAGCTATAGAGTTGGTACTGCATTGTGTGGCATGAAAACTCACTGCAGACAACAATTGGGGTGATTCTTGAGTTTTTGTCTACATTAATGAATTTAATTGGACGGGTCAGTGGagtagtggttaggcctcagcattctcactgctgcagcctgggtttgattcccagctAGGGAACCAAGACATCCGATGTAAaaattgtgccaaatcaaatatgtggaccaatgatcagCTGTAATGACCCCCAtccgggagcagccaaaagaagaacagCACTGAATTTAATTGGATGCTTTGAAATGAAATGGCTGGATTCTAAACTCCACCCATTCAGTGTACAGACATTAGTTGGCtaagagaagaaataaaagtaagttttttttcttggaaatgtaattaagaaaGAATATAAGCATTCAAATTCAATAACACTTGTCAAGTATAAATACAAAGTAAAATTACTCAAATATCTTCCACCCCTGGGTATGATTATGGGAATTTAGAATAAAATTACAGTCACCTGACTGAATTTTACTGATTTtgaaacatacactatatggccaaaagtatgtggacacctgaccaatcacgtCCCAtttgcttgctgaacatcccatttaaGATTcattccctctttgctgtttcAATAATCttcactcttctgagaaggctttccactaaatcttggagtgtagctgtggctatttgcccattcagccacaaaagcattagtaaGGTCAGGCACATCTtgggcaagaaggcctggcgCATAGTTGGTGTGTcaattcatctcaaaggtgttctctatgcaggCACCCTCAAGTTcatccactccaactttggcaaaccatgtcttcatggagattactttgtgcacagggcattgtcatgtttgAACAGGATTGGACCTGTTAGTTTGAGGAAGGCTCACATGTGGGTATGAttgtcagatgtccacatatttttggccatatagtgtatttatagaAATTTTACATACAATGAGGTACAGGGTTTTTCAGTGGTGTCTAGACCACTAACTTTTAGTAAAAGtacttgtttttaaatctgatgaaactggattttctgaaaaaaaaaacaaaaaaaaaaacacagacacagggaaaacatgcacATTATGCATTGTGTTCATTCCTTTTTAGCTCTGTAAGATCATATTCAGTTTCTGTGTGCTCTTACTAGGTATATTCTTCTGCCTGTTTGCCCTGCACATATCATTTACTGCACTACACTTCCTGTAGAGTTTGAGGGGCTGGTAAAGGACAGCTAAAAAAGACTGTGTGGGTGAGTAGGTCATCACAAATGGAAATTTTGAGTGTAAAGTGACAACCCATCTCACCACCTCTGCCACTTGAAACCAgagggggattttttttttttttttgcatgatgtCTGTTCATTTTCACTTTATGGCAGTGTAGAAACCATTTGTATCTATGGATTTTCTTTCCACTGtcgatatatttttttatgatttccaCTAAAACTAGTAAACTCTGTAAAATTTGGAATCACTTAAACTCTATTCAAAGCAAAGATTATAAGCAgcattttttattgtgttatcCAATATaacccagaagaggacgggttccttttgaatctggttcctttCAAAGTTTCTTCATCCCAGGGAATTTTCCTTGCCCTTTCTTGCCACCTCTGACTCATTCTTTCGTGATTTAAATTTACAGTCAAGCTAATGGTGTGAACTACAACCGCTCACCAGAGACACCAATCATCTCTGCGACTTTTATTCCAAATATTATggttcttcataatgtctctatacacatttaatgagaagtTGTATTTGACAGGATacgatgacattttttttattcccttttttcCAGTCTTGCAGCACAAAGGAACAAATTGCAGGAGAGAGCTAAAGTTGTGAGAGGGGGAATGAAAAGCTATTCGAGCCATTCTAGCATGAGcagttttccactagattttggaacctggctgtggggatttgcacaTTCCACAAaagcatttgtgaggtcaggaaCTGATTTCGAGTGAGGAGATCTGGAGCATAGTCTGCGATTCCAATTCATCTCAAAGtggttcagtggagttgaggccAACTCAAGtgcttccactccaaccttgtaTAATGTCAAGATTGTGGTCCAAAGATCTAGATCCAATtctaagaaatattttttttcattcagttaagaaagaaaataataaatttttcaaattatttaaataaatttctccAATAAATCATCAGTGTTCACAATACTATTACAATACTGTTAGacttttcactctttttctacagtaatatactgtaatcaGCCTTTCTGGTATGTTACTACAGACTTGTATATTTACTGTCTTCAAgtaattattttctatattacTATGGTTAAAGCTGATGTTTGCTTACTGTTTATTctggtgtgaattttttttttttatttctgaacaaaCTATCATCAGTGGTCACCCTGTAACTCAAGTCACAAATACCCCAAATGTATCTAATAAATAGAATTGTACGACAATTAGTtatggtccactaatttgattggttgaccAGCATTCCAAgtgtgcttatatttagtattcaATTTAACAGACATCATCACAAATCAGATTTACCgaaataaatgcattcaaaatataaattttaaatgtataaatttatccctaat

Function

GO:

id name namespace
GO:0072330 monocarboxylic acid biosynthetic process biological_process
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:0046031 ADP metabolic process biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006090 pyruvate metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0006096 glycolytic process biological_process
GO:1901292 nucleoside phosphate catabolic process biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0009108 obsolete coenzyme biosynthetic process biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0046939 nucleotide phosphorylation biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0006733 obsolete oxidoreduction coenzyme metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0019359 nicotinamide nucleotide biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0019362 pyridine nucleotide metabolic process biological_process
GO:0019363 pyridine nucleotide biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0009132 nucleoside diphosphate metabolic process biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0006757 ATP generation from ADP biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0090407 organophosphate biosynthetic process biological_process
GO:0042866 pyruvate biosynthetic process biological_process
GO:1901137 carbohydrate derivative biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0072524 pyridine-containing compound metabolic process biological_process
GO:0072525 pyridine-containing compound biosynthetic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009166 nucleotide catabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0006793 phosphorus metabolic process biological_process
GO:0046434 organophosphate catabolic process biological_process
GO:0006796 phosphate-containing compound metabolic process biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0034655 nucleobase-containing compound catabolic process biological_process
GO:0046496 nicotinamide nucleotide metabolic process biological_process
GO:0016052 carbohydrate catabolic process biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis

RNA

RNA id representative length rna type GC content exon number start site end site
TU226617 True 2815 TUCP 0.36 2 5611120 5613954

Neighbor

gene id symbol gene type direction distance location
si:ch211-180a12.2 LOC108273640 coding downstream 38231 5555957 ~ 5572889 (-)
LOC117598535 NA coding downstream 56213 5545841 ~ 5554907 (-)
si:ch211-136m16.8 NA coding downstream 65235 5540886 ~ 5545885 (-)
ppp4cb ppp4c,ppp4cb,LOC105024361,LOC107590569,LOC107690278 coding downstream 71394 5528649 ~ 5539726 (-)
eif3c LOC100304733,LOC107693689,LOC107708970,LOC107562013,LOC107689927,LOC107571764 coding downstream 84733 5512767 ~ 5526387 (-)
aldoab aldoa,LOC107660454,LOC107708965,LOC107689930 coding upstream 476 5614430 ~ 5618990 (-)
vkorc1 vkorl,LOC107719575,LOC107654009,LOC107598672,LOC108441164,LOC108413442 coding upstream 60770 5674724 ~ 5677961 (-)
zgc:92313 LOC108273548 coding upstream 78166 5692120 ~ 5709289 (-)
LOC113527266 LOC108441168 coding upstream 193866 5807820 ~ 5814472 (-)
LOC113527265 LOC108274106,LOC108441156 coding upstream 203738 5817692 ~ 5849431 (-)
G191424 NA non-coding downstream 126453 5482620 ~ 5484667 (-)
G191413 NA non-coding downstream 165953 5442962 ~ 5445167 (-)
G191279 LOC108273947,LOC107720033,LOC107689922,LOC107561997,LOC107693674 non-coding downstream 223983 5382995 ~ 5387137 (-)
G190885 NA non-coding downstream 860243 4701104 ~ 4750877 (-)
G190849 NA non-coding downstream 944549 4666312 ~ 4666571 (-)
G191463 NA non-coding upstream 52219 5666173 ~ 5667846 (-)
G191464 NA non-coding upstream 53930 5667884 ~ 5669753 (-)
G191468 NA non-coding upstream 74640 5688594 ~ 5689568 (-)
G191490 NA non-coding upstream 126024 5739978 ~ 5740199 (-)
LOC113527731 NA non-coding upstream 321585 5935539 ~ 5938213 (-)
gdpd3b gdpd3 other downstream 120195 5484691 ~ 5490925 (-)
LOC113527048 LOC108274181 other downstream 547702 5059498 ~ 5063418 (-)
G191056 taok2,LOC108273910 other downstream 658261 4949163 ~ 4952859 (-)
trnap-cgg_3 NA other downstream 692143 4911734 ~ 4918977 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other downstream 2755627 2852055 ~ 2855493 (-)
LOC113527291 LOC108274042 other upstream 154574 5768528 ~ 5791270 (-)
itga3b itga3 other upstream 932987 6546941 ~ 6594390 (-)
ipmkb ipmk other upstream 1786046 7400000 ~ 7418378 (-)
ccdc6b ccdc6,ccdc6b,LOC107695538,LOC107654058,LOC107727062,LOC107746455 other upstream 1967396 7581350 ~ 7595881 (-)
ank3b ank3,LOC107746453,LOC107654059 other upstream 1987264 7601218 ~ 7767512 (-)

Expression


Co-expression Network