G191463


Basic Information

Item Value
gene id G191463
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 5666173 ~ 5667846 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU226650
ttatattatatattatattatcggACTTGCagcccaaaggtgaacctgaaggtcgtgggttcgagtctcaggtcctgcagggattgtaggtgggaggagtgaatgaccagctctctcccaccctcaataccatgactgaggtgagacccttgagcaaggcaccgaacccccaactacTCCCCAGGCGCCGcggcaaaaaaggctgcccactgctccgggtgtgtgttcacggtgtgtgtgtgtgttcactactgtgtgtgtgcaattggataggttaaatgcagagcacaaattccgagtatgggtcaccatacttggccacaagtcacttcactaaaaaggaagtgaaaaacaatcagaaacattttagggaaaaataggaaaaataaaaaacttacaataacctggttgcataaatgtgcacacccttttataattgggaatgtcgctgtgttcagaatcaaccaatcacattcaatctcatgttaaaaagtaattatcatacagatgtcatcaatgaaattattctgattaactccaaataaagaccagctgtttctataggattttcttcacatcttcttggtttcatctgacttctgaagccatggtctgcaaagagcttacaaagcatgtacagggtcccactgtcgaaaggtattgatcaggagagaggtacaaaaaaatttccaaaacattagatgtaccatggaatactgtgaaggccatcatcaacaagttgAGAAagtggagcaccacagtgacatcaaccagaacaggatgtccctccaaaatttataaaaggccATGACATAAACTTACCAGGGAGATTGGCAAGAGacctacagaaacaataaaggagctgcaggaatatctaacaagtactgattactctttgcatgtgacaacaatctctcataatcttcacatgtctgggctatggggtagcgTGGCTacatggaagccctttctcacaaaaaaacttacaagcacaactaaatcaccccaactatgtggcaaaatgtgttatggtctgatgagacaaatTACAAAAGGTATAATTATTctataattccaaaaggtatgtttggtgcaaaacaaaaatcacttcaccaaaagaacaccacgttgaagcatggtggtggcagcatcatgctttagggctgcttttcttcagccagaactggggcttttatcaaggtggagggaatcatgaatagctacaaataccagtcgattgtagtgcaaaacctttaggtgtctgctagtaagctgaagatgaaaaggaatttccccttttagcatgacaatgacccaaagcatacatgcaaatcaacaaaggaatggcttaaccaaaagaagatcaatgtttttgaatggcctagccagagcccagacctgaatccaactaaaaatctgtggggtgacctgaagcgggctgtgcgcAGGAGATGCCTTTACAATTtaatggatctagaatgtttttgcaagaaagagtgagaaaatattgccaagtcaagatgtgccatgctgacagacaattagccaaaaagactgagtggtgtaatataatcaaaaggtgcttcaataaagtattagtttaggggtgtgcacacttatgaattcaggttgttgtaagtttt

Function

GO:

id name namespace
GO:0008144 drug binding molecular_function
GO:0019825 oxygen binding molecular_function
GO:0036094 small molecule binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU226650 True 1643 lncRNA 0.41 2 5666173 5667846

Neighbor

gene id symbol gene type direction distance location
aldoab aldoa,LOC107660454,LOC107708965,LOC107689930 coding downstream 47183 5614430 ~ 5618990 (-)
si:ch211-180a12.2 LOC108273640 coding downstream 93284 5555957 ~ 5572889 (-)
LOC117598535 NA coding downstream 111266 5545841 ~ 5554907 (-)
si:ch211-136m16.8 NA coding downstream 120288 5540886 ~ 5545885 (-)
ppp4cb ppp4c,ppp4cb,LOC105024361,LOC107590569,LOC107690278 coding downstream 126447 5528649 ~ 5539726 (-)
vkorc1 vkorl,LOC107719575,LOC107654009,LOC107598672,LOC108441164,LOC108413442 coding upstream 6878 5674724 ~ 5677961 (-)
zgc:92313 LOC108273548 coding upstream 24274 5692120 ~ 5709289 (-)
LOC113527266 LOC108441168 coding upstream 139974 5807820 ~ 5814472 (-)
LOC113527265 LOC108274106,LOC108441156 coding upstream 149846 5817692 ~ 5849431 (-)
irf3 LOC108273898 coding upstream 199095 5866941 ~ 5882707 (-)
G191424 NA non-coding downstream 181506 5482620 ~ 5484667 (-)
G191413 NA non-coding downstream 221006 5442962 ~ 5445167 (-)
G191279 LOC108273947,LOC107720033,LOC107689922,LOC107561997,LOC107693674 non-coding downstream 279036 5382995 ~ 5387137 (-)
G190885 NA non-coding downstream 915296 4701104 ~ 4750877 (-)
G190849 NA non-coding downstream 999602 4666312 ~ 4666571 (-)
G191464 NA non-coding upstream 38 5667884 ~ 5669753 (-)
G191468 NA non-coding upstream 20748 5688594 ~ 5689568 (-)
G191490 NA non-coding upstream 72132 5739978 ~ 5740199 (-)
LOC113527731 NA non-coding upstream 267693 5935539 ~ 5938213 (-)
G191762 NA non-coding upstream 550860 6218706 ~ 6219394 (-)
G191430 NA other downstream 52219 5611120 ~ 5613954 (-)
gdpd3b gdpd3 other downstream 175248 5484691 ~ 5490925 (-)
LOC113527048 LOC108274181 other downstream 602755 5059498 ~ 5063418 (-)
G191056 taok2,LOC108273910 other downstream 713314 4949163 ~ 4952859 (-)
trnap-cgg_3 NA other downstream 747196 4911734 ~ 4918977 (-)
LOC113527291 LOC108274042 other upstream 100682 5768528 ~ 5791270 (-)
itga3b itga3 other upstream 879095 6546941 ~ 6594390 (-)
ipmkb ipmk other upstream 1732154 7400000 ~ 7418378 (-)
ccdc6b ccdc6,ccdc6b,LOC107695538,LOC107654058,LOC107727062,LOC107746455 other upstream 1913504 7581350 ~ 7595881 (-)
ank3b ank3,LOC107746453,LOC107654059 other upstream 1933372 7601218 ~ 7767512 (-)

Expression


Co-expression Network