LOC113527671 (LOC108441166,LOC108273636)


Basic Information

Item Value
gene id LOC113527671
gene name LOC108441166,LOC108273636
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 5730154 ~ 5740905 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU226687
CTGAATCATGTATTTTTCAATTtacatggtttttttttagacacttcataaaatatgtttcacatattttcacatgtggacttttcacatgtagtgcatgtgttttgtttgtgtgtgtgtgtttttttttaacagatgattaatttattttcatatgtgaaCTCTTCACATGTGAATATGTGATAAGGGGGATTCCACCATACAGAAACAGTGAGAGGAAGTCAACAAGCATGTTGTAAACACTACTTGGAACAGAGCCATTGTGTCAAAACTGACATCTGTTGAAATACTTGCACTAGAGCGAATGACTATCAGTGCTCATTAAAAAGCCAATGACAATCATTAACAGTTATGCATCTTGAATTTTCATAATGACTTAAAAAGCACTTGACAATCCAAAGTTTCTCATCACTGCTTTTTGCCCCAAAACATTATCATGCTTTAATTCCTTCTGTAATTTGATTAGaaaatatatttgatatttattcatatttttgccatattctGTGTGACCATCTTTAAATGCTAGGATTTCTGATCTGTGTACTCCTTTTCGTATATACTCATTAAATCTGTGAATGTGTacatatgtgcatgtgtgtgttggagggcTCATTAAATCTGTGAATGTGTACagatgtgcatatgtgtgttggAGGGCAGGAATGCAATGCAATTGTTTTTTGTGTAAGGATCAAAAAGGTGTCTTTTTCCTGCAGTCAACCTATTTTGTGTATGCACT
>XM_026915697.2
tccttctcttgcTGCGAGGACATAAGTGCCCGCAGACGCAATTCTCTATGGAGCCCTCCCTCCATCTCACTCTCTTCCACTCCGTCtaactctctccatctctctctctctctctctctctctctcttccattcTTTGCCCTGCTATCTCACCCTCTATCTTACAAACATACAGTCCATTGTCAACAAACAGAACAAGCAGGATAAAACTCCTGTGTTTTATGAAGAGCAATGACTTTGGCATCACACTCCATGATGTCTTGTGCATAAATCAACATTTGGTTAAAGGGTTTAGTGTATGATGCATGAGAAGTTAACAATGCTGAATTTGCAAAGTAGTTCAAATTGGAACATGCCTAATGACTGGTACCATCAGCAGAACACTGCTGCCACCCATCACAGTACAGTGTCCAATGGCTGCATGGTGGACACAGACATAGGGATGGGGACAGGAGGAGGAAGAGTGCAGATGGAGAGGGACGACAGTGAAGAATCACAGCTGCGGCTGCAGCTGAAGAGGAAACTGCAGAGGAACAGGACTAGCTTTACTCAGGAGCAGATTGAGGCTCTGGAGAAAGAATTTGAGAGGACACACTACCCTGACGTCTTTGCACGAGAACGTCTAGCAAATAAAATAGACCTCCCAGAAGCACGGATCCAAGTGTGGTTTTCCAACCGAAGAGCCAAATGGAGACGAGAAGAGAAGCTGCGCAACCAGAGGAAATCTGGGGGTGGAACTTCATGCACCCAAACACATACTCCGCTTAGCACTTCCTTTAACTCTGCCCTCTATCAGCAGCACAGCAACAGTGCAGgCTCCATGATCAATCAAAGTGAGACAACTCTCCCTAGTTACAGTTCCCTCTCTGTCTATTCTGGAGTACAgTCGGCCCCCTCATATCCTTGCATGCTGCCCCCTTCCCCTTCTGCCCCACAATCCTTTGAGCCTTCTTCTTACCCCTCCCCCCACCTCCCAGGCCCGCCTACTGGAAACACCAGCACAGgtttGATCTCTCCAGGCATTTCAGTACCGGTCCAGGTCCCAGGGAATGAGCAGAACATGGGCCAGAACTTGGGCCAGTACTGGGCTCGACTGCAGTGAGGAAAAAGCAGTTCATGAGCATGTGAGGAAGTGATAGAGTCAGAAACAAAATCTTGAAGAGAAAGCTCATGCATGAAAACTCGGCCATGCTGAATACGCAGGGATACAAATTACGAATTAACATTCAATTTAATGCACTCTGCAGAAGTGTTGTAACTTTGTGGTTTTGTAAACCATATTGCATTGTCACCAGCATGAATCAGTTGCAATGCACTATGGGACATTTTGTCTTGCTTGATAGTCTGTTGTTTAAACTTACACTACTAAATTCGCAAAATAAAGTGGATCATACATTAGCATTTTAAGGGATTATCTGAACACACGCTAAATTTTTGATAAAGCCTATTCAGTAAGTGTGCTTATTATGTACACTTATTAGTAAGTCTGAGTTTTCATCCATGGCCAGAGAGagatgtaaacttttttttaggtTACACAAAGAACCAAAAAATAAGGAAATCCTCTGCAAGGTTGTTTACAAAAGTATTTACTTCTCTTTTAGAATAATTTCTTAATGGGAAAATTTCTTCATGAAAAATTTCCATGCTCtaattgaatgaaaaataatgtgaaaCCGAACTTTTGGTAAATATCTGAATCATGTATTTTTCAATTtacatggtttttttttagacacttcataaaatatgtttcacatattttcacatgtggacttttcacatgtagtgcatgtgttttgtttgtgtgtgtgtgtttttttttaacagatgattaatttattttcatatgtgaaCTCTTCACATGTGAATATGTGATAAGGGGGATTCCACCATACAGAAACAGTGAGAGGAAGTCAACAAGCATGTTGTAAACACTACTTGGAACAGAGCCATTGTGTCAAAACTGACATCTGTTGAAATACTTGCACTAGAGCGAATGACTATCAGTGCTCATTAAAAAGCCAATGACAATCATTAACAGTTATGCATCTTGAATTTTCATAATGACTTAAAAAGCACTTGACAATCCAAAGTTTCTCATCACTGCTTTTTGCCCCAAAACATTATCATGCTTTAATTCCTTCTGTAATTTGATTAGaaaatatatttgatatttattcatatttttgccatattctGTGTGACCATCTTTAAATGCTAGGATTTCTGATCTGTGTACTCCTTTTCGTATATACTCATTAAATCTGTGAATGTGTacatatgtgcatgtgtgtgttggagggcTCATTAAATCTGTGAATGTGTACagatgtgcatatgtgtgttggAGGGCAGGAATGCAATGCAATTGTTTTTTGTGTAAGGATCAAAAAGGTGTCTTTTTCCTGCAGTCAACCTATTTTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU226687 False 742 lncRNA 0.33 1 5740164 5740905
XM_026915697.2 True 2427 mRNA 0.41 8 5730154 5740896

Neighbor

gene id symbol gene type direction distance location
mapk7 mapk7 coding upstream 40573 5682041 ~ 5689581 (+)
LOC113527309 LOC108274209,LOC108273638 coding upstream 64187 5626391 ~ 5665967 (+)
tbx6 tbx6 coding upstream 230409 5494906 ~ 5499745 (+)
nif3l1 nif3l1 coding upstream 245477 5477331 ~ 5484677 (+)
cabp5a cabp5a,LOC108273649,LOC108425940,LOC107562016,LOC107708978,LOC107693687,LOC108246804 coding upstream 260046 5464205 ~ 5470108 (+)
mmp25b LOC108273420 coding downstream 5968 5746873 ~ 5766384 (+)
kansl1a LOC108274073 coding downstream 200044 5940949 ~ 5964560 (+)
scn4aa scn4a,scn4aa,LOC108435052,LOC107598592,LOC107708946,LOC107732174,LOC107664628,LOC107654028 coding downstream 282862 6023767 ~ 6061324 (+)
cd79b NA coding downstream 328514 6069419 ~ 6074090 (+)
plekhm1 plekhm1 coding downstream 427961 6168866 ~ 6184364 (+)
G191472 NA non-coding upstream 6550 5722829 ~ 5723604 (+)
G191387 NA non-coding upstream 57659 5672142 ~ 5672495 (+)
G191386 NA non-coding upstream 58902 5671014 ~ 5671252 (+)
G191375 NA non-coding upstream 62552 5596722 ~ 5667602 (+)
G191329 aldoa,aldoab,LOC107581735 non-coding upstream 111046 5614407 ~ 5619108 (+)
G191497 NA non-coding downstream 31995 5772900 ~ 5776010 (+)
G191568 NA non-coding downstream 165559 5906464 ~ 5908176 (+)
G191588 NA non-coding downstream 199716 5940621 ~ 5940847 (+)
G191591 NA non-coding downstream 205320 5946225 ~ 5948586 (+)
G191595 NA non-coding downstream 260163 6001068 ~ 6055205 (+)
LOC113527051 LOC108274342,LOC108274341,LOC108425932 other upstream 389591 5330042 ~ 5340563 (+)
gngt2b NA other upstream 425245 5303077 ~ 5304909 (+)
G190865 NA other upstream 890785 4755097 ~ 4839369 (+)
lrrc18b lrrc18 other upstream 1134125 4593107 ~ 4596029 (+)
p4ha1a p4ha1,LOC108273903,LOC107753313,LOC107560551 other upstream 1799711 3903347 ~ 3930443 (+)
G191581 NA other downstream 228838 5969743 ~ 5983237 (+)
LOC113527389 NA other downstream 984416 6725321 ~ 6728391 (+)
asah2 asah2,LOC107598643 other downstream 1081835 6822740 ~ 6836383 (+)
tfam tfam other downstream 1687640 7428545 ~ 7436372 (+)
G192484 ank3 other downstream 1865076 7605981 ~ 7628111 (+)

Expression


Co-expression Network