G191591


Basic Information

Item Value
gene id G191591
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 5946225 ~ 5948586 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU226822
TGACTCAGTGTTAAGAACATATGCATCCATAATGAaatcataatataataaatgttcatttattagtttatattgTATTGCCATGCATAAACTATACTCCCCACTGTAGTTTTAGCAAATATTAGGAAAGGAAGTGATAGTGTGTTAACCCTAGTTAAAgatccaaatacttattttttttttttttttaaacctttaaacaaAATGGCATTTTCAGAGTTGGATTAATGGGAAGTTCACCGTCTTGCTCAATTCCCCTACACGACAGATTCGTTTTGTGATTTTAGCATTGCAGTTGGAATGATGAGTTTCTTAAAGAAATTAGTGTGTGAAAGAAACTTCCCAATGAGCAACAGATTAGAAGTCAGCTCAGAATAAGTGGTGTTCAGGTGGTACTGTAGACAGTGTCATGGCAAACATCAAGAACATGCGCTTGGTTGGGACTTCTATTTCAGTGAACTGCCCACTGAACTAGAGAATTAGCAATTCCACAGTTTGCTCATGTACAAATACTGCTCTGTACATTGAATTCTATTTCCTAGAGTATTTGTAGTTCTTAATTTACTGTCCTGAATGGCGTATGGTGGTATATGACTGGGTCTGCTCTACACTGAACTTTGTCAAGGGCCTCTGTTAATTTCCACTCTGGCCTTGTTTGCTCAGTGAGATCATAGATCTTGTTGTCATAACATGGTCTTGTCTAAAGTTGTGTTCGTTCTTCTTCTTGGCCACGGTCTTACTCCATTGCACAAGGATGAATTTCCTGTTTGCTGGAAAAAGAGGGAGCGATTCCTCTTCATAGAATGACTGgacaaaaaaagtaaaccacCAATCTGTTCCATCTGGACAGAACTCCATTTTGGGGATTGtgattttttgaaaaaaaaaaatttttttttattattattaatttattttttttatttcattttaggtttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU226822 True 939 lncRNA 0.35 2 5946225 5948586

Neighbor

gene id symbol gene type direction distance location
mmp25b LOC108273420 coding upstream 179841 5746873 ~ 5766384 (+)
mapk7 mapk7 coding upstream 256644 5682041 ~ 5689581 (+)
LOC113527309 LOC108274209,LOC108273638 coding upstream 280258 5626391 ~ 5665967 (+)
tbx6 tbx6 coding upstream 446480 5494906 ~ 5499745 (+)
nif3l1 nif3l1 coding upstream 461548 5477331 ~ 5484677 (+)
scn4aa scn4a,scn4aa,LOC108435052,LOC107598592,LOC107708946,LOC107732174,LOC107664628,LOC107654028 coding downstream 75181 6023767 ~ 6061324 (+)
cd79b NA coding downstream 120833 6069419 ~ 6074090 (+)
plekhm1 plekhm1 coding downstream 220280 6168866 ~ 6184364 (+)
arhgap27 LOC108273963 coding downstream 237648 6186234 ~ 6214345 (+)
trnas-gcu_1 NA coding downstream 267259 6215845 ~ 6215926 (+)
G191588 NA non-coding upstream 5378 5940621 ~ 5940847 (+)
G191568 NA non-coding upstream 38049 5906464 ~ 5908176 (+)
G191497 NA non-coding upstream 170215 5772900 ~ 5776010 (+)
G191472 NA non-coding upstream 222621 5722829 ~ 5723604 (+)
G191387 NA non-coding upstream 273730 5672142 ~ 5672495 (+)
G191595 NA non-coding downstream 52482 6001068 ~ 6055205 (+)
G191711 NA non-coding downstream 266687 6215273 ~ 6217094 (+)
G191719 NA non-coding downstream 319938 6268524 ~ 6270885 (+)
G191866 NA non-coding downstream 512225 6460811 ~ 6461014 (+)
G191868 NA non-coding downstream 514803 6463389 ~ 6473466 (+)
LOC113527671 LOC108441166,LOC108273636 other upstream 205320 5730154 ~ 5740905 (+)
LOC113527051 LOC108274342,LOC108274341,LOC108425932 other upstream 605662 5330042 ~ 5340563 (+)
gngt2b NA other upstream 641316 5303077 ~ 5304909 (+)
G190865 NA other upstream 1106856 4755097 ~ 4839369 (+)
lrrc18b lrrc18 other upstream 1350196 4593107 ~ 4596029 (+)
G191581 NA other downstream 21157 5969743 ~ 5983237 (+)
LOC113527389 NA other downstream 776735 6725321 ~ 6728391 (+)
asah2 asah2,LOC107598643 other downstream 874154 6822740 ~ 6836383 (+)
tfam tfam other downstream 1479959 7428545 ~ 7436372 (+)
G192484 ank3 other downstream 1657395 7605981 ~ 7628111 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G202844 NA non-coding CI01000047 null 3332850 ~ 3432629 (-)
mexican tetra (Astyanax mexicanus) G170009 NA non-coding NC_035915.1 CM008318.1 24903455 ~ 24903676 (-)