LOC113527731


Basic Information

Item Value
gene id LOC113527731
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 5935539 ~ 5938213 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU226870
gaacTTTTCCTAGCTCACCAAGTCTCctgcactctttctctctctctctctctcttacaaaCAGATAGAACCCAGAGATGCCTGAGTCTGCAGACGTTCCTGCTCAGTGCCAAGTCCTCAAAGAAGAGGTGGATAAATGTGTCCAAGGGAAGGGCGCAGAGGCCTGTAAGGAGCTGATGGAAGCTTTCGAGGCCTGTGTGAAAAGTGCCGTGGAAGCTTCATGAGAAGAAAACTTCAGGTTCATACCAAAGGTCCTCTTTCTTCGGGTCCTTCAGTATCCCTGCATTCCCTACTGCATTTTGCGTTGGACTGGACCATTAGAAAGACTGGCCAGGGGTGTTGGTGCTGCCAGATTCTTGGATTTGCTTTGTCTGGATCAGAGATGCCTCAATGATGGCTCTGAAATTATTGTCAATGTCCTATGCAAATGTAGCAGCAAGAGCCCACGGGATTTAGATCCAATATGTCAGAACAAGTATTTCTTTATCTAAGAAAAATGCAGTTCATATAAATGATTTTGgaa
>TU226871
gaacTTTTCCTAGCTCACCAAGTCTCctgcactctttctctctctctctctctcttacaaaCAGATAGAACCCAGAGATGCCTGAGTCTGCAGACGTTCCTGCTCAGTGCCAAGTCCTCAAAGAAGAGGTGGATAAATGTGTCCAAGGGAAGGGCGCAGAGGCCTGTAAGGAGCTGATGGAAGCTTTCGAGGCCTGTGTGAAAAGTGCCGTGGAAGCTTCATGAGAAGAAAACTTCAGGTTCATACCAAAGGTCCTCTTTCTTCGGGTCCTTCAGTATCCCTGCATTCCCTACTGCATTTTGCGTTGGACTGGACCATTAGAAAGACTGGCCAGGGGTGTTGGTGCTGCCAGATTCTTGGATTTGCTTTGTCTGGATCAGAGATGCCTCAATGATGGCTCTGAAATTATTGTCAATGTCCTATGCAAATGTAGCAGCAAGAGCCCACGGGATTTAGATCCAATATGTCAGAACAAGTATTTCTTTATCTAAGAAAAATGCAGTTCATATAAATGATTTTGgaataaaatatactttaattaTTGTGGTTGCCTTTTCATTGgattttattatagttttatagaCAAGCAATGATCATAACAGCTGTATTTTGCAGTGTTCATTTGCACATCTACAGG
>TU226872
CGGACTGCCTGTATAAATATGCATCCTCtcacgtgttttttttttgtgaagaacTTTTCCTAGCTCACCAAGTCTCctgcactctttctctctctctctctctcttacaaaCAGATAGAACCCAGAGATGCCTGAGTCTGCAGACGTTCCTGCTCAGTGCCAAGTCCTCAAAGAAGAGGTGGATAAATGTGTCCAAGGGAAGGGCGCAGAGGCCTGTAAGGAGCTGATGGAAGCTTTCGAGGCCTGTGTGAAAAGTGCCGTGGAAGCTTCATGAGAAGAAAACTTCAGGTTCATACCAAAGGTCCTCTTTCTTCGGGTCCTTCAGTATCCCTGCATTCCCTACTGCATTTTGCGTTGGACTGGACCATTAGAAAGACTGGCCAGGGGTGTTGGTGCTGCCAGATTCTTGGATTTGCTTTGTCTGGATCAGAGATGCCTCAATGATGGCTCTGAAATTATTGTCAATGTCCTATGCAAATGTAGCAGCAAGAGCCCACGGGATTTAGATCCAATATGTCAGAACAAGTATTTCTTTATCTAAGAAAAATGCAGTTCATATAAATGATTTTGgaa
>TU226873
gaacTTTTCCTAGCTCACCAAGTCTCctgcactctttctctctctctctctctcttacaaaCAGATAGAACCCAGAGATGCCTGAGTCTGCAGACGTTCCTGCTCAGTGCCAAGTCCTCAAAGAAGAGGTGGATAAATGTGTCCAAGGGAAGGGCGCAGAGGCCTGTAAGGAGCTGATGGAAGCTTTCGAGGCCTGTGTGAAAAGTGCCGTGGAAGCTTCATGAGAAGAAAACTTCAGGTCCTCTTTCTTCGGGTCCTTCAGTATCCCTGCATTCCCTACTGCATTTTGCGTTGGACTGGACCATTAGAAAGACTGGCCAGGGGTGTTGGTGCTGCCAGATTCTTGGATTTGCTTTGTCTGGATCAGAGATGCCTCAATGATGGCTCTGAAATTATTGTCAATGTCCTATGCAAATGTAGCAGCAAGAGCCCACGGGATTTAGATCCAATATGTCAGAACAAGTATTTCTTTATCTAAGAAAAATGCAGTTCATATAAATGATTTTGgaa
>XR_003402884.2
gttttttttttgtgaagaacTTTTCCTAGCTCACCAAGTCTCctgcactctttctctctctctctctctcttacaaaCAGATAGAACCCAGAGATGCCTGAGTCTGCAGACGTTCCTGCTCAGTGCCAAGTCCTCAAAGAAGAGGTGGATAAATGTGTCCAAGGGAAGGGCGCAGAGGCCTGTAAGGAGCTGATGGAAGCTTTCGAGGCCTGTGTGAAAAGTGCCGTGGAAGCTTCATGAGAAGAAAACTTCAGGTTCATACCAAAGGTCCTCTTTCTTCGGGTCCTTCAGTATCCCTGCATTCCCTACTGCATTTTGCGTTGGACTGGACCATTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU226870 False 523 lncRNA 0.46 3 5935653 5938163
TU226871 True 637 lncRNA 0.43 3 5935539 5938163
TU226872 False 573 lncRNA 0.45 3 5935653 5938213
TU226873 False 510 lncRNA 0.46 3 5935653 5938163
XR_003402884.2 False 336 lncRNA 0.48 3 5935856 5938179

Neighbor

gene id symbol gene type direction distance location
si:ch211-255p10.4 LOC108273514,LOC108441159,LOC103358360,LOC103033508,LOC107598587,LOC107654020,LOC107557374 coding downstream 3014 5910434 ~ 5932525 (-)
prr12a LOC108273897,LOC108441158,LOC107708947,LOC107664611,LOC107557376,LOC107654018 coding downstream 32054 5885505 ~ 5903485 (-)
irf3 LOC108273898 coding downstream 52832 5866941 ~ 5882707 (-)
LOC113527265 LOC108274106,LOC108441156 coding downstream 86108 5817692 ~ 5849431 (-)
LOC113527266 LOC108441168 coding downstream 121067 5807820 ~ 5814472 (-)
mapta LOC108274153,LOC108441162,LOC103381620 coding upstream 31523 5969736 ~ 6000168 (-)
zgc:163073 NA coding upstream 68480 6006693 ~ 6011524 (-)
LOC117598564 LOC108273543,LOC108262318 coding upstream 153497 6091710 ~ 6097905 (-)
LOC117598474 LOC108262318,LOC108273543 coding upstream 162868 6101081 ~ 6102526 (-)
LOC117598565 LOC108262318,LOC108273543 coding upstream 170768 6108981 ~ 6110127 (-)
G191490 NA non-coding downstream 195340 5739978 ~ 5740199 (-)
G191468 NA non-coding downstream 245971 5688594 ~ 5689568 (-)
G191464 NA non-coding downstream 265786 5667884 ~ 5669753 (-)
G191463 NA non-coding downstream 267693 5666173 ~ 5667846 (-)
G191424 NA non-coding downstream 450872 5482620 ~ 5484667 (-)
G191762 NA non-coding upstream 280493 6218706 ~ 6219394 (-)
G191763 NA non-coding upstream 281599 6219812 ~ 6220381 (-)
G191772 kif22 non-coding upstream 313209 6251422 ~ 6252182 (-)
LOC117598466 NA non-coding upstream 321652 6259865 ~ 6261598 (-)
G191786 NA non-coding upstream 352198 6290411 ~ 6290912 (-)
LOC113527291 LOC108274042 other downstream 144269 5768528 ~ 5791270 (-)
G191430 NA other downstream 321585 5611120 ~ 5613954 (-)
gdpd3b gdpd3 other downstream 444614 5484691 ~ 5490925 (-)
LOC113527048 LOC108274181 other downstream 872121 5059498 ~ 5063418 (-)
G191056 taok2,LOC108273910 other downstream 982680 4949163 ~ 4952859 (-)
itga3b itga3 other upstream 608728 6546941 ~ 6594390 (-)
ipmkb ipmk other upstream 1461787 7400000 ~ 7418378 (-)
ccdc6b ccdc6,ccdc6b,LOC107695538,LOC107654058,LOC107727062,LOC107746455 other upstream 1643137 7581350 ~ 7595881 (-)
ank3b ank3,LOC107746453,LOC107654059 other upstream 1663005 7601218 ~ 7767512 (-)
si:dkey-94l16.4 LOC108273749 other upstream 2909449 8847662 ~ 8857748 (-)

Expression


Co-expression Network