G191762


Basic Information

Item Value
gene id G191762
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 6218706 ~ 6219394 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU227047
ggttatgattggagatgatcggttatgattggatgtgataggttatgattgaagatgatcggttatgattggatatgataggttatgattggatatgatcggttatgattggatgtgataggttatgattggagatgatcggttatgattggatgtgataggttatgattggagatgatcggttatgattggatgtgatagGTTATGATcggatatgatcggttatgattggatatgatcggttatgattgggtGTTATAGGTTCGTTTGATAAATCCCGCCTCTTGTTTTCGTGCGAGCTCTTGGCctgaatggacaaaatgatggcgttactgactaattataaagtaagtaaacaacTCACCCGCTTAGATATCACTGCTTTGTGTCAcgtcaaaaatgaaattttgaaaTGGCTGAAAACGTGATTagtttgtctgtgtttgtgtttacagagcttTTATGACGACGACCCGAAAATAAGTTGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU227047 True 489 lncRNA 0.38 2 6218706 6219394

Neighbor

gene id symbol gene type direction distance location
LOC117598588 LOC108273543,LOC108262318 coding downstream 53772 6163064 ~ 6164934 (-)
LOC117598586 LOC108262318,LOC108273543 coding downstream 63824 6153790 ~ 6154882 (-)
LOC117598661 NA coding downstream 83586 6129107 ~ 6135120 (-)
LOC117598565 LOC108262318,LOC108273543 coding downstream 108579 6108981 ~ 6110127 (-)
LOC117598474 LOC108262318,LOC108273543 coding downstream 116180 6101081 ~ 6102526 (-)
rbp4 rbp4 coding upstream 49479 6268873 ~ 6270634 (-)
fra10ac1 fra10ac1,LOC108274300,LOC107654038,LOC107743956,LOC107664625,LOC107557362 coding upstream 65666 6285060 ~ 6299979 (-)
noc3l noc3l coding upstream 198082 6417476 ~ 6436006 (-)
tbc1d12b tbc1d12,LOC107708937,LOC107743959,LOC107664632,LOC107654040 coding upstream 218285 6437679 ~ 6460359 (-)
LOC113527434 tnks2,LOC108274191,LOC108431390,LOC107654041 coding upstream 245621 6465015 ~ 6504729 (-)
LOC113527731 NA non-coding downstream 280493 5935539 ~ 5938213 (-)
G191490 NA non-coding downstream 478507 5739978 ~ 5740199 (-)
G191468 NA non-coding downstream 529138 5688594 ~ 5689568 (-)
G191464 NA non-coding downstream 548953 5667884 ~ 5669753 (-)
G191463 NA non-coding downstream 550860 5666173 ~ 5667846 (-)
G191763 NA non-coding upstream 418 6219812 ~ 6220381 (-)
G191772 kif22 non-coding upstream 32028 6251422 ~ 6252182 (-)
LOC117598466 NA non-coding upstream 40471 6259865 ~ 6261598 (-)
G191786 NA non-coding upstream 71017 6290411 ~ 6290912 (-)
G191788 NA non-coding upstream 74136 6293530 ~ 6295793 (-)
LOC113527291 LOC108274042 other downstream 427436 5768528 ~ 5791270 (-)
G191430 NA other downstream 604752 5611120 ~ 5613954 (-)
gdpd3b gdpd3 other downstream 727781 5484691 ~ 5490925 (-)
LOC113527048 LOC108274181 other downstream 1155288 5059498 ~ 5063418 (-)
G191056 taok2,LOC108273910 other downstream 1265847 4949163 ~ 4952859 (-)
itga3b itga3 other upstream 327547 6546941 ~ 6594390 (-)
ipmkb ipmk other upstream 1180606 7400000 ~ 7418378 (-)
ccdc6b ccdc6,ccdc6b,LOC107695538,LOC107654058,LOC107727062,LOC107746455 other upstream 1361956 7581350 ~ 7595881 (-)
ank3b ank3,LOC107746453,LOC107654059 other upstream 1381824 7601218 ~ 7767512 (-)
si:dkey-94l16.4 LOC108273749 other upstream 2628268 8847662 ~ 8857748 (-)

Expression


Co-expression Network