G191788


Basic Information

Item Value
gene id G191788
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 6293530 ~ 6295793 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU227076
taaaactgtcctgttaaatattaaacttaATTGATGTTATGTATACAATATTAATAGGAACGTGTACAcccctgcttattcatgcaattatccaatcagccaatcatttggcagctGCAACATGTCAAAAGCTTCTGTTTATGTTCACacaaaaacatcagaatgggaggAAAATACGATTCATTGATTTTAAccgtgacatggttgttggtgccggagatgctggtttgagtatttcagaaactcctgggattttcacacacaacagtatctagagtttacacagaatggtgcataAAACaatgatgagagaggtcagaggagaacaaCTACATTGGTCTGAGCTTAAAGGAAGGCTACGGAAACTCatttaaccactctttacaaacatggagagcagaaaagcagaaaaatgagCTACAGCTGCAGAAGAACACATTGAGTTATAGTCTTTTCGGTCAAGAACGGGAATCTAGGGCTAGAGTTGTCActggctcaccaaaactggacagtttaaaATTGTAACAAGGCCAAGTGATGTTTGAACCTGcactcactgtagcctcagactgGTTTAAGTCACTAAgatctcatttttttcacaatctgatgtttgatgtgaacattaactgaagcttggTCTCTCTCACTCGTTTGCCTCGCGCCTCCGGGATTGGATGTTTGAAATCCGCCTCAGCCCTGAgtgcgcagagtttgcatgttctccctgttctttgggggttttctccaggtactccagtttcctcacaaagacatgcgctgtaggctgattggcatttccaaattgtccataatgtgtgaatgggtgtgtgggaatgtgagtgtgtgtgcttttgtgccctgagatgggttggcactccatccagggtgtccttgtgcctgagttccctgggataggctccaggttccctcacgaccctgtgtaggataagccatacagagaatggatgatctgcacatgaacatttttattagttaaCTACAACTAAACATTTAGCTGTTTACAGAGGTTATGGGATGTGTTGCCTCATCCACAGAGTGAACCATGTTATTATCATAAGCATTGATTCCTCCACCCCCAGTTATAATTTTTGGATCTGGAAAGACATGCTTTTCTTTTGGTATGTCAGCTTGTGAATCTTGCTACACTCATTGTCCAGGACTAATAAATAGTGCCACTAGATGGAGATAGAGATTCAGACTTCATGCTGTGCCCAAGCAGGTACAATAAATCACAAAAGACTTTTATTAATCACAGCCACCTGCCTTTTGCAGAAAGGTTGCACTACTTATATCATTTTTGTAATTCTATAGGTAACAGATAGGACAATTGATTGACTATTAGATGCTGTAATATAAGATATTATAAGTTGTTCCGGTCCTGGGTTTTGGGTGCGGACCAGATGATTGATAGGTGTAATAGGCCTGTTTAAGTGAATTTATATAgctttatacactatatggccagaagtatgtggacacctgaacatcacacttaTATGTGAtgttccccaaactgttgctgcaAAGTGGAAGCACAGAGTCGTCTAGAaggtctttgtatgctgtagaattaagaTATAACTATGatctaagaggcccaaacctgttccagcatgacaatgcccttgtgcacaaagcaaggtcaatgaaaacatggtttgccaaggacGGAGTGGAAGAACCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU227076 True 1709 lncRNA 0.41 3 6293530 6295793

Neighbor

gene id symbol gene type direction distance location
rbp4 rbp4 coding downstream 22896 6268873 ~ 6270634 (-)
LOC117598588 LOC108273543,LOC108262318 coding downstream 128596 6163064 ~ 6164934 (-)
LOC117598586 LOC108262318,LOC108273543 coding downstream 138648 6153790 ~ 6154882 (-)
LOC117598661 NA coding downstream 158410 6129107 ~ 6135120 (-)
LOC117598565 LOC108262318,LOC108273543 coding downstream 183403 6108981 ~ 6110127 (-)
noc3l noc3l coding upstream 121683 6417476 ~ 6436006 (-)
tbc1d12b tbc1d12,LOC107708937,LOC107743959,LOC107664632,LOC107654040 coding upstream 141886 6437679 ~ 6460359 (-)
LOC113527434 tnks2,LOC108274191,LOC108431390,LOC107654041 coding upstream 169222 6465015 ~ 6504729 (-)
abi3b LOC108273397 coding upstream 212057 6507850 ~ 6513085 (-)
dlx4b LOC108274309 coding upstream 341562 6637355 ~ 6646574 (-)
G191786 NA non-coding downstream 2618 6290411 ~ 6290912 (-)
LOC117598466 NA non-coding downstream 31932 6259865 ~ 6261598 (-)
G191772 kif22 non-coding downstream 41348 6251422 ~ 6252182 (-)
G191763 NA non-coding downstream 73149 6219812 ~ 6220381 (-)
G191762 NA non-coding downstream 74136 6218706 ~ 6219394 (-)
G191947 NA non-coding upstream 167695 6463488 ~ 6488739 (-)
G191949 NA non-coding upstream 182396 6478189 ~ 6478817 (-)
G191950 NA non-coding upstream 183974 6479767 ~ 6481169 (-)
G192012 NA non-coding upstream 249239 6545032 ~ 6546253 (-)
G192014 dlx3 non-coding upstream 325677 6621470 ~ 6622643 (-)
LOC113527291 LOC108274042 other downstream 502260 5768528 ~ 5791270 (-)
G191430 NA other downstream 679576 5611120 ~ 5613954 (-)
gdpd3b gdpd3 other downstream 802605 5484691 ~ 5490925 (-)
LOC113527048 LOC108274181 other downstream 1230112 5059498 ~ 5063418 (-)
G191056 taok2,LOC108273910 other downstream 1340671 4949163 ~ 4952859 (-)
itga3b itga3 other upstream 251148 6546941 ~ 6594390 (-)
ipmkb ipmk other upstream 1104207 7400000 ~ 7418378 (-)
ccdc6b ccdc6,ccdc6b,LOC107695538,LOC107654058,LOC107727062,LOC107746455 other upstream 1285557 7581350 ~ 7595881 (-)
ank3b ank3,LOC107746453,LOC107654059 other upstream 1305425 7601218 ~ 7767512 (-)
si:dkey-94l16.4 LOC108273749 other upstream 2551869 8847662 ~ 8857748 (-)

Expression


Co-expression Network