G191949


Basic Information

Item Value
gene id G191949
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 6478189 ~ 6478817 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU227256
ATTTTCCACGGATAAGAGGCGTTGCCTTTGTATTTCCACACGTAAGACACGTTGCCTTCGTATTTCCACATGTAAGAGGCATAGCTTTCATATTTCCATGCGTAAGAGGCGTAGCTTTCGTACTTCTACAAGTAAATGGCGTAGGTTTCGTACTTCTACACGTAAGAGGCGTAGCTTTCGTATTTCCACACGTAAGAGGCGTAGCTTTCGTATTTCCACACGTAAGAGGCGTAGCTTTCGTATTTCCACACGTAAGAGGCATAGCTTTCGTATTTCCACACGTAAGAGGCGTAGCTTTCGTACTTCTACACATAAGAGGCATAGCTGTCGTATTTCCATGCGTAAGAGAATTTGTACTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU227256 True 360 lncRNA 0.44 2 6478189 6478817

Neighbor

gene id symbol gene type direction distance location
tbc1d12b tbc1d12,LOC107708937,LOC107743959,LOC107664632,LOC107654040 coding downstream 17830 6437679 ~ 6460359 (-)
noc3l noc3l coding downstream 42183 6417476 ~ 6436006 (-)
fra10ac1 fra10ac1,LOC108274300,LOC107654038,LOC107743956,LOC107664625,LOC107557362 coding downstream 178210 6285060 ~ 6299979 (-)
rbp4 rbp4 coding downstream 207555 6268873 ~ 6270634 (-)
LOC117598588 LOC108273543,LOC108262318 coding downstream 313255 6163064 ~ 6164934 (-)
abi3b LOC108273397 coding upstream 29033 6507850 ~ 6513085 (-)
dlx4b LOC108274309 coding upstream 158538 6637355 ~ 6646574 (-)
kat7b kat7,LOC108443263,LOC107598609,LOC107739754,LOC107708935,LOC107654043 coding upstream 248764 6727581 ~ 6740582 (-)
g6pca.1 LOC108274343 coding upstream 268235 6747052 ~ 6752732 (-)
aarsd1 aarsd1,LOC107695514,LOC107739756,LOC107708900 coding upstream 277968 6756785 ~ 6766100 (-)
G191788 NA non-coding downstream 182396 6293530 ~ 6295793 (-)
G191786 NA non-coding downstream 187277 6290411 ~ 6290912 (-)
LOC117598466 NA non-coding downstream 216591 6259865 ~ 6261598 (-)
G191772 kif22 non-coding downstream 226007 6251422 ~ 6252182 (-)
G191763 NA non-coding downstream 257808 6219812 ~ 6220381 (-)
G191950 NA non-coding upstream 950 6479767 ~ 6481169 (-)
G192012 NA non-coding upstream 66215 6545032 ~ 6546253 (-)
G192014 dlx3 non-coding upstream 142653 6621470 ~ 6622643 (-)
G192070 NA non-coding upstream 311049 6789866 ~ 6790153 (-)
G192061 NA non-coding upstream 317294 6796111 ~ 6796506 (-)
LOC113527291 LOC108274042 other downstream 686919 5768528 ~ 5791270 (-)
G191430 NA other downstream 864235 5611120 ~ 5613954 (-)
gdpd3b gdpd3 other downstream 987264 5484691 ~ 5490925 (-)
LOC113527048 LOC108274181 other downstream 1414771 5059498 ~ 5063418 (-)
G191056 taok2,LOC108273910 other downstream 1525330 4949163 ~ 4952859 (-)
itga3b itga3 other upstream 68124 6546941 ~ 6594390 (-)
ipmkb ipmk other upstream 921183 7400000 ~ 7418378 (-)
ccdc6b ccdc6,ccdc6b,LOC107695538,LOC107654058,LOC107727062,LOC107746455 other upstream 1102533 7581350 ~ 7595881 (-)
ank3b ank3,LOC107746453,LOC107654059 other upstream 1122401 7601218 ~ 7767512 (-)
si:dkey-94l16.4 LOC108273749 other upstream 2368845 8847662 ~ 8857748 (-)

Expression


Co-expression Network