G191950


Basic Information

Item Value
gene id G191950
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 6479767 ~ 6481169 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU227257
AGAtggaacaactatttatagctgctataatgcgagtgattacaggaactaacttgtcttgacgttttacaacaataaatgtaactataaacagttaaaaagcatgatgtgtccctcaataataaatttaaaattgtaattgctggcaaattgctgtggaataagagaaATAATGCACTtaagggacatgctgttattggaaaataacccACTTTGGGGTGAGAACAGTAACTGTTTAGCACTGGGCCACATCACCATCctagtcactgattattttcctataacggcatgcCCCGTCATGTTGTATTCCTTACTcgatcaacaccttctgaccaatcagattcaagaaatCAATAGTGCCATCTTTTCTGCGTTGGGTCTGGCATTTCCGGCTCGTTATTATCTAAGCAAGAAGCCTGCgtttaatttttagttttaattgtttatatttgcGATAACTGGACTGAATTAAAGTAGTTATATATGGTGAAAAGAAACCACAGAAGCCcacagcttcagcttcagtaGTGTATTACATTCTACCCAGAAACAGGCGCCTATTGTCCTGAAATCCAGGGAGCCAgatttcagtgattttaatgataaacaactaaaaaacaaacaaaatacaggAAAAGACCCAAAAACTGGAACAACAAAGGACTAGACCAAGCAGGACAAGGCAAAGAAATCCTAACATGAAAACGGAAATTACTCgtgacgtgacgtgacgtgacgtgacgtgacaGCAACAGTGCAACCTCATGTAATGCTTCACAACCAAGGAgggaaaaacacagaacttaaatagtgtGACTAATTAGGGAAACATaaaacaggtgtgcacaaacacaggaagtgaggcagacaacaaaagaagaaatttaaaaaaatgagtgccctctggtggtctgggaacGAATTGTCCATAGTGGACATGACACCTATGTGGTATTACATTataatttgttttcattgttgGTTAAGTAAACAATGCGTAGCATATAAAATCCCCAATAATGAATAGTCATAATGGACATAATCAAATGTGTCGACTAATTGTTGCAGCCCTAGATTCACGGAATATGAATCTTTGTACCTATCTTCTGGATCTTCTAAATTAGTCAATTAGTATAAGATCACAGTATGTTGTTTGAGACCCGAGCTTACAACTATGAGGTTCATGTTCATGATGATGTTGGCATCATCTTGCATCATGTCACGAGTGGATGAATGTGAAAGGATTGTGGTTAACATCACCAGATATTAAGAAGCATGCTCACTTTGCAGTGCAGGAGATATGTGCTGTGTGTAGCCATGTCCGTTTGTGAGTCTTGCCTCATTTTGTTGAATTTGCACCTGAATGTTACTTGTGATCTGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU227257 True 1382 lncRNA 0.38 2 6479767 6481169

Neighbor

gene id symbol gene type direction distance location
tbc1d12b tbc1d12,LOC107708937,LOC107743959,LOC107664632,LOC107654040 coding downstream 19408 6437679 ~ 6460359 (-)
noc3l noc3l coding downstream 43761 6417476 ~ 6436006 (-)
fra10ac1 fra10ac1,LOC108274300,LOC107654038,LOC107743956,LOC107664625,LOC107557362 coding downstream 179788 6285060 ~ 6299979 (-)
rbp4 rbp4 coding downstream 209133 6268873 ~ 6270634 (-)
LOC117598588 LOC108273543,LOC108262318 coding downstream 314833 6163064 ~ 6164934 (-)
abi3b LOC108273397 coding upstream 26681 6507850 ~ 6513085 (-)
dlx4b LOC108274309 coding upstream 156186 6637355 ~ 6646574 (-)
kat7b kat7,LOC108443263,LOC107598609,LOC107739754,LOC107708935,LOC107654043 coding upstream 246412 6727581 ~ 6740582 (-)
g6pca.1 LOC108274343 coding upstream 265883 6747052 ~ 6752732 (-)
aarsd1 aarsd1,LOC107695514,LOC107739756,LOC107708900 coding upstream 275616 6756785 ~ 6766100 (-)
G191949 NA non-coding downstream 950 6478189 ~ 6478817 (-)
G191788 NA non-coding downstream 183974 6293530 ~ 6295793 (-)
G191786 NA non-coding downstream 188855 6290411 ~ 6290912 (-)
LOC117598466 NA non-coding downstream 218169 6259865 ~ 6261598 (-)
G191772 kif22 non-coding downstream 227585 6251422 ~ 6252182 (-)
G192012 NA non-coding upstream 63863 6545032 ~ 6546253 (-)
G192014 dlx3 non-coding upstream 140301 6621470 ~ 6622643 (-)
G192070 NA non-coding upstream 308697 6789866 ~ 6790153 (-)
G192061 NA non-coding upstream 314942 6796111 ~ 6796506 (-)
G192062 NA non-coding upstream 318473 6799642 ~ 6800076 (-)
LOC113527291 LOC108274042 other downstream 688497 5768528 ~ 5791270 (-)
G191430 NA other downstream 865813 5611120 ~ 5613954 (-)
gdpd3b gdpd3 other downstream 988842 5484691 ~ 5490925 (-)
LOC113527048 LOC108274181 other downstream 1416349 5059498 ~ 5063418 (-)
G191056 taok2,LOC108273910 other downstream 1526908 4949163 ~ 4952859 (-)
itga3b itga3 other upstream 65772 6546941 ~ 6594390 (-)
ipmkb ipmk other upstream 918831 7400000 ~ 7418378 (-)
ccdc6b ccdc6,ccdc6b,LOC107695538,LOC107654058,LOC107727062,LOC107746455 other upstream 1100181 7581350 ~ 7595881 (-)
ank3b ank3,LOC107746453,LOC107654059 other upstream 1120049 7601218 ~ 7767512 (-)
si:dkey-94l16.4 LOC108273749 other upstream 2366493 8847662 ~ 8857748 (-)

Expression


Co-expression Network