G192014 (dlx3)


Basic Information

Item Value
gene id G192014
gene name dlx3
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 6621470 ~ 6622643 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU227335
TTCagatttgcatttattcatCCTGAAACAACATTACAATAAAAGCACGAGAATCCTCTATAAAAACGCGGGGGTTTATAAACAGTATTGTTTAGtggttctgttttatttaaacacactctcacacacgcacacacacatacacacacgctcgcgcgcacacacacatatatatactgtatatacacaacTACATTTTGTACAAATTGATATAACTTATGTCCTGAGTCTCTGAAGCGGAGTGACATTGTGGTATGTGTGTCGGGCAACTGCACAAATGTTGGGGACTACTGTATCTTTCCtcatgtaaacaaaaacaattatcCGTAAACATCAATATGAATAAGGGATTGagtaagtaaaataatttaaaaccaCGCCATATAACTTTAGGCCTAGGATCTGCATAGTCGAGCTGGTGAAATATTGCTGCAACACAATGTGTGttccttctcttccttctcttccttctccttctcttctccttctcttctcttctctttctcttctccttcttcttctctcccttctcctcctctcctcttctccttctcttctgaGGCTGATCAAACTTTTAATCAGTCACTTTtttatcagagaaaaaaaaacaatcaagtgTTTTCAGCacgctttgtttgtttgtttgtttgttttgttttgatgtttttctctctctctctctctttctctctttcagcttatcTTCATACGAACAGCCTAGGCGCTCGTGTATATAAAGATTACAAAAATAAAGTCCAGTcccttttgtttttcatttttatattaaactctTGGAGTGAAAAGTCTGTGGTCAGTAGACGCTTTGCGGGGGGCCGGCGTGCTGCTGGTACCACGCGCTGCTGTAGTCTTCCGGGTAGGGCGGCGTCGACGAGCTGAGCGCGACCGGCGTCACGTGACCGCGGCCCACCGGGTTCGCGTGCGCGCCGGTGTCCCAGAGCGCGGGCGAGGGCGGCGAGTTACACGACATGGAGTCGCTGGCGTTGGGACTGTGCTCCAGAGGGATCTCGCCGTTCTTGTACAGCTTCTTGAACTTGGACCTCCGGTTCTGGAACCATATTTTCACCTGGTCGAGAAACAGAGGAATAATCATTTGTGTGCCATTTGTg

Function

symbol description
dlx3 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in epithelial cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including odontoblast differentiation; odontogenesis of dentin-containing tooth; and placenta development. Predicted to be located in nucleus. Predicted to be part of chromatin. Implicated in amelogenesis imperfecta type 4 and trichodontoosseous syndrome.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU227335 True 1127 lncRNA 0.44 2 6621470 6622643

Neighbor

gene id symbol gene type direction distance location
abi3b LOC108273397 coding downstream 108385 6507850 ~ 6513085 (-)
LOC113527434 tnks2,LOC108274191,LOC108431390,LOC107654041 coding downstream 116741 6465015 ~ 6504729 (-)
tbc1d12b tbc1d12,LOC107708937,LOC107743959,LOC107664632,LOC107654040 coding downstream 161111 6437679 ~ 6460359 (-)
noc3l noc3l coding downstream 185464 6417476 ~ 6436006 (-)
fra10ac1 fra10ac1,LOC108274300,LOC107654038,LOC107743956,LOC107664625,LOC107557362 coding downstream 321491 6285060 ~ 6299979 (-)
dlx4b LOC108274309 coding upstream 14712 6637355 ~ 6646574 (-)
kat7b kat7,LOC108443263,LOC107598609,LOC107739754,LOC107708935,LOC107654043 coding upstream 104938 6727581 ~ 6740582 (-)
g6pca.1 LOC108274343 coding upstream 124409 6747052 ~ 6752732 (-)
aarsd1 aarsd1,LOC107695514,LOC107739756,LOC107708900 coding upstream 134142 6756785 ~ 6766100 (-)
a1cf a1cf,LOC107695528,LOC107708930,LOC107654048 coding upstream 213794 6836437 ~ 6847966 (-)
G192012 NA non-coding downstream 75217 6545032 ~ 6546253 (-)
G191947 NA non-coding downstream 132731 6463488 ~ 6488739 (-)
G191950 NA non-coding downstream 140301 6479767 ~ 6481169 (-)
G191949 NA non-coding downstream 142653 6478189 ~ 6478817 (-)
G191788 NA non-coding downstream 325677 6293530 ~ 6295793 (-)
G192070 NA non-coding upstream 167223 6789866 ~ 6790153 (-)
G192061 NA non-coding upstream 173468 6796111 ~ 6796506 (-)
G192062 NA non-coding upstream 176999 6799642 ~ 6800076 (-)
G192075 sgms1 non-coding upstream 185562 6808205 ~ 6809758 (-)
G192074 NA non-coding upstream 190522 6813165 ~ 6815435 (-)
itga3b itga3 other downstream 27080 6546941 ~ 6594390 (-)
LOC113527291 LOC108274042 other downstream 830200 5768528 ~ 5791270 (-)
G191430 NA other downstream 1007516 5611120 ~ 5613954 (-)
gdpd3b gdpd3 other downstream 1130545 5484691 ~ 5490925 (-)
LOC113527048 LOC108274181 other downstream 1558052 5059498 ~ 5063418 (-)
ipmkb ipmk other upstream 777357 7400000 ~ 7418378 (-)
ccdc6b ccdc6,ccdc6b,LOC107695538,LOC107654058,LOC107727062,LOC107746455 other upstream 958707 7581350 ~ 7595881 (-)
ank3b ank3,LOC107746453,LOC107654059 other upstream 978575 7601218 ~ 7767512 (-)
si:dkey-94l16.4 LOC108273749 other upstream 2225019 8847662 ~ 8857748 (-)
LOC113527700 shisa6,LOC108273473,LOC108424875,LOC107706559 other upstream 2745574 9368217 ~ 9419487 (-)

Expression


Co-expression Network