G192070


Basic Information

Item Value
gene id G192070
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 6789866 ~ 6790153 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU227400
CGGGAAGCTTGGTCGTAGTGACTGGTGTCCGAGCAACGTGGCCCTCGGTTACAGAAGGACAAGATGACAGAAAAGCAAGGGCTCAGCAGGGATTTGAACCTTTTGGGACCTCTCGAGAACCACACAGCCAAGCTAGAACCAAGTAGACAGTAGCCAAGGGTTCCTTTAGTTTTAACCACCCAGAGGTAGCCTATTTGACGTAAAACCTGGGCTCGTCCGGGATTTGAACCCGGGACCTCTCGCACCCGAAGCGAGAATCATACCCCTAGACCAACGAGCCAAACCCCC

Function

GO: NA

KEGG:

id description
ko05322 Systemic lupus erythematosus
ko05034 Alcoholism

RNA

RNA id representative length rna type GC content exon number start site end site
TU227400 True 288 lncRNA 0.54 1 6789866 6790153

Neighbor

gene id symbol gene type direction distance location
aarsd1 aarsd1,LOC107695514,LOC107739756,LOC107708900 coding downstream 23766 6756785 ~ 6766100 (-)
g6pca.1 LOC108274343 coding downstream 37134 6747052 ~ 6752732 (-)
kat7b kat7,LOC108443263,LOC107598609,LOC107739754,LOC107708935,LOC107654043 coding downstream 49284 6727581 ~ 6740582 (-)
dlx4b LOC108274309 coding downstream 143292 6637355 ~ 6646574 (-)
abi3b LOC108273397 coding downstream 276781 6507850 ~ 6513085 (-)
a1cf a1cf,LOC107695528,LOC107708930,LOC107654048 coding upstream 46284 6836437 ~ 6847966 (-)
pcdh15b pcdh15b,pcdh15,LOC107695531,LOC107654051,LOC108273410,LOC108411428 coding upstream 257418 7047571 ~ 7232075 (-)
ube2d1b ube2d1,ube2d1b,LOC106607701,LOC105891213,LOC107717106,LOC107553913,LOC107733527,LOC105010549 coding upstream 631813 7421966 ~ 7427834 (-)
zgc:171971 LOC108273425 coding upstream 645356 7435509 ~ 7442712 (-)
fam13c fam13c coding upstream 756910 7547063 ~ 7560750 (-)
G192014 dlx3 non-coding downstream 167223 6621470 ~ 6622643 (-)
G192012 NA non-coding downstream 243613 6545032 ~ 6546253 (-)
G191947 NA non-coding downstream 301127 6463488 ~ 6488739 (-)
G191950 NA non-coding downstream 308697 6479767 ~ 6481169 (-)
G191949 NA non-coding downstream 311049 6478189 ~ 6478817 (-)
G192061 NA non-coding upstream 5958 6796111 ~ 6796506 (-)
G192062 NA non-coding upstream 9489 6799642 ~ 6800076 (-)
G192075 sgms1 non-coding upstream 18052 6808205 ~ 6809758 (-)
G192074 NA non-coding upstream 23012 6813165 ~ 6815435 (-)
G192385 NA non-coding upstream 438237 7228390 ~ 7312887 (-)
itga3b itga3 other downstream 195476 6546941 ~ 6594390 (-)
LOC113527291 LOC108274042 other downstream 998596 5768528 ~ 5791270 (-)
G191430 NA other downstream 1175912 5611120 ~ 5613954 (-)
gdpd3b gdpd3 other downstream 1298941 5484691 ~ 5490925 (-)
LOC113527048 LOC108274181 other downstream 1726448 5059498 ~ 5063418 (-)
ipmkb ipmk other upstream 609847 7400000 ~ 7418378 (-)
ccdc6b ccdc6,ccdc6b,LOC107695538,LOC107654058,LOC107727062,LOC107746455 other upstream 791197 7581350 ~ 7595881 (-)
ank3b ank3,LOC107746453,LOC107654059 other upstream 811065 7601218 ~ 7767512 (-)
si:dkey-94l16.4 LOC108273749 other upstream 2057509 8847662 ~ 8857748 (-)
LOC113527700 shisa6,LOC108273473,LOC108424875,LOC107706559 other upstream 2578064 9368217 ~ 9419487 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_018411 CR385078.6 non-coding NC_007131.7 CM002904.2 47120504 ~ 47125583 (-)
rainbow trout (Oncorhynchus mykiss) G1292985 NA non-coding NC_048579.1 CM023233.2 41409610 ~ 41409952 (-)