G192075 (sgms1)


Basic Information

Item Value
gene id G192075
gene name sgms1
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 6808205 ~ 6809758 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU227407
ATGAGTATCAGTGCATCCTTTAAGGTCACATTATTATATTTCgatgattttttttggtcaagATTTCAGATTGTGCTTGCAAAAGAGTCCCGGCCAATTTTCCCAACTCTCAAAACCTGGCATCTCTCAGAATTTCTCATGAACAAACATGACTTCAGATCAAAACGAACATGATGACTGTTCAGTTCAGCTGCCACTGGTTATCGCTCTTTGACACTTCCCATCAAGATTGCGTTTTTCACCTGAGACAGGATGCAGAATTCCTAATAAATACTGAACATTTTAAATTGGGACTGCAACAACTTGACTGTAAGCAGATCAGATGGGTTACAAATGAATTTTACACACCTCATACCACAGGATAATCCAAGAATATAATCACTGGCAGCGGTGAACTGACCTCCAAACTGGCCCAATTATCCCCTAGCGTAGGCATTAGCTAACTTAACAAGAGCAACAGCTTGACAACCTATGAACATAATTTTATATGCAAAACATTAAAGGAAAGGCTAGCTCGAGACAGGTAATGTTtataaaccttttttattttgttcacttTTGACACAAACTCTCGATGGTCACTTTAAATTTGGCCAAAACCTTGTTCTGCCTTCCAAATTGAACCTTTATCTCAGGTGTGGAAAGATTTACCCATGAAATGCTGGCTACCTAAGCAGGCTTGCACTATCAGTGAATACAAAAACTCTTACTGCTCTTGGATCAGTTTCAGAAGAATTTGTACCTTAGCTGAGCACTTAAAGTGCATCCCTGGAACAGGCAGAGTAGTGATGTACATGGTGATACACCGGTACAGGTACAGCGTCCCTACAATGAAAAGAAACCGCCGACCAACAATGGACCTGCCAAAGGAAAGACTGATGTCACCAGAGAACATGATCCAATACCTTTTAGAAATATGTGTGACTTCAAAAGTGTCCATTGTTTTTAAAAGAACACTTACTTGTGTTTCAAGAGACTCCACTGTAAGATCCATAACATCACCAGAATCATCCCATTAATCTCACACACGGTAAAAGCCCACTCCACACGGTCGAAAAAGTCAAAGAACTTATCAGGCAATGGAGGGCTCACCTCCTTGGGAGGCACACGCTCATGGACTACAGAAATCATTACAGTGGTTAAAATAAAGCAGCAGATGGCATATAACAAAGTCATGGCAGTCTTGCCCCACTCAGTGGGAAATGAAGAGCTGGGTGGGCCAGGGATTAGAATTCGCACCACTTCCTTATGAAAACCGTTGGCTAAGCCATTGCGCGTTGTCTTACTCCCATCGCCAGCGGCATGGCCATTAACATGGCCGTTCACGTGAGTCTCCATGCGCGGCTCAATGGTGACCTCTTCCCTGGACCACTGCGCTGTTTTCATGCCCGTCCCCGAGCGATCTGTAGAGACGGAATGAAGGGACCAGTGTAGAGCGCTAGAGGATGCACAGCGTTCCTTTAGCAACGCTCATCATGCAGAAGGATGGAGGCTGAAACCAGCTGTAGAAAACAAGCTCTGGATGTCAACTGGACATCATCTCCTAATGCATGG
>TU227408
GTGTTTCAAGAGACTCCACTGTAAGATCCATAACATCACCAGAATCATCCCATTAATCTCACACACGGTAAAAGCCCACTCCACACGGTCGAAAAAGTCAAAGAACTTATCAGGCAATGGAGGGCTCACCTCCTTGGGAGGCACACGCTCATGGACTACAGAAATCATTACAGTGGTTAAAATAAAGCAGCAGATGGCATATAACAAAGTCATGGCAGTCTTGCCCCACTCAGTGGGAAATGAAGAGCTGGGTGGGCCAGGGATTAGAATTCGCACCACTTCCTTATGAAAACCGTTGGCTAAGCCATTGCGCGTTGTCTTACTCCCATCGCCAGCGGCATGGCCATTAACATGGCCGTTCACGTGAGTCTCCATGCGCGGCTCAATGGTGACCTCTTCCCTGGACCACTGCGCTGTTTTCATGCCCGTCCCCGAGCGATCTGTAGAGACGGAATGAAGGGACCAGTGTAGAGCGCTAGAGGATGCACAGCGTTCCTTTAGCAACGCTCATCATGCAGAAGGATGGAGGCTGAAACCAGCTGTAGAAAACAAGCTCTGGATGTCAACTGGACATCATCTCCTAATGCATGG

Function

symbol description
sgms1 Enables ceramide cholinephosphotransferase activity; ceramide phosphoethanolamine synthase activity; and sphingomyelin synthase activity. Involved in sphingomyelin biosynthetic process. Acts upstream of or within ceramide biosynthetic process. Located in Golgi trans cisterna. Is integral component of Golgi membrane.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU227407 True 1554 lncRNA 0.44 1 6808205 6809758
TU227408 False 591 lncRNA 0.50 1 6808205 6808795

Neighbor

gene id symbol gene type direction distance location
aarsd1 aarsd1,LOC107695514,LOC107739756,LOC107708900 coding downstream 42105 6756785 ~ 6766100 (-)
g6pca.1 LOC108274343 coding downstream 55473 6747052 ~ 6752732 (-)
kat7b kat7,LOC108443263,LOC107598609,LOC107739754,LOC107708935,LOC107654043 coding downstream 67623 6727581 ~ 6740582 (-)
dlx4b LOC108274309 coding downstream 161631 6637355 ~ 6646574 (-)
abi3b LOC108273397 coding downstream 295120 6507850 ~ 6513085 (-)
a1cf a1cf,LOC107695528,LOC107708930,LOC107654048 coding upstream 26679 6836437 ~ 6847966 (-)
pcdh15b pcdh15b,pcdh15,LOC107695531,LOC107654051,LOC108273410,LOC108411428 coding upstream 237813 7047571 ~ 7232075 (-)
ube2d1b ube2d1,ube2d1b,LOC106607701,LOC105891213,LOC107717106,LOC107553913,LOC107733527,LOC105010549 coding upstream 612208 7421966 ~ 7427834 (-)
zgc:171971 LOC108273425 coding upstream 625751 7435509 ~ 7442712 (-)
fam13c fam13c coding upstream 737305 7547063 ~ 7560750 (-)
G192062 NA non-coding downstream 8129 6799642 ~ 6800076 (-)
G192061 NA non-coding downstream 11699 6796111 ~ 6796506 (-)
G192070 NA non-coding downstream 18052 6789866 ~ 6790153 (-)
G192014 dlx3 non-coding downstream 185562 6621470 ~ 6622643 (-)
G192012 NA non-coding downstream 261952 6545032 ~ 6546253 (-)
G192074 NA non-coding upstream 3407 6813165 ~ 6815435 (-)
G192385 NA non-coding upstream 418632 7228390 ~ 7312887 (-)
G192437 NA non-coding upstream 618829 7428587 ~ 7428883 (-)
G192545 NA non-coding upstream 819553 7629311 ~ 7630373 (-)
G192583 NA non-coding upstream 1030605 7840363 ~ 7841460 (-)
itga3b itga3 other downstream 213815 6546941 ~ 6594390 (-)
LOC113527291 LOC108274042 other downstream 1016935 5768528 ~ 5791270 (-)
G191430 NA other downstream 1194251 5611120 ~ 5613954 (-)
gdpd3b gdpd3 other downstream 1317280 5484691 ~ 5490925 (-)
LOC113527048 LOC108274181 other downstream 1744787 5059498 ~ 5063418 (-)
ipmkb ipmk other upstream 590242 7400000 ~ 7418378 (-)
ccdc6b ccdc6,ccdc6b,LOC107695538,LOC107654058,LOC107727062,LOC107746455 other upstream 771592 7581350 ~ 7595881 (-)
ank3b ank3,LOC107746453,LOC107654059 other upstream 791460 7601218 ~ 7767512 (-)
si:dkey-94l16.4 LOC108273749 other upstream 2037904 8847662 ~ 8857748 (-)
LOC113527700 shisa6,LOC108273473,LOC108424875,LOC107706559 other upstream 2558459 9368217 ~ 9419487 (-)

Expression


Co-expression Network