G192385


Basic Information

Item Value
gene id G192385
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 7228390 ~ 7312887 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU227735
tgcaacccgaaggtgaacctgaaggttgtgggttcgagtctcaggtccggcagggattgtaggtggggggagtgaatgaccagcgctctctcccgccctcaataccacgactgaggtgagacccttgagcaaggcaccaaacccccaactgctccccgggcgccgcagcaaaaaaggctgcccactgctccgggtgtgtgttcacggtgtgtgtgtgttcactactgtgtgtgtgcacttggatgggttaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU227735 True 253 lncRNA 0.58 2 7228390 7312887

Neighbor

gene id symbol gene type direction distance location
a1cf a1cf,LOC107695528,LOC107708930,LOC107654048 coding downstream 380424 6836437 ~ 6847966 (-)
aarsd1 aarsd1,LOC107695514,LOC107739756,LOC107708900 coding downstream 462290 6756785 ~ 6766100 (-)
g6pca.1 LOC108274343 coding downstream 475658 6747052 ~ 6752732 (-)
kat7b kat7,LOC108443263,LOC107598609,LOC107739754,LOC107708935,LOC107654043 coding downstream 487808 6727581 ~ 6740582 (-)
dlx4b LOC108274309 coding downstream 581816 6637355 ~ 6646574 (-)
ube2d1b ube2d1,ube2d1b,LOC106607701,LOC105891213,LOC107717106,LOC107553913,LOC107733527,LOC105010549 coding upstream 109079 7421966 ~ 7427834 (-)
zgc:171971 LOC108273425 coding upstream 122622 7435509 ~ 7442712 (-)
fam13c fam13c coding upstream 234176 7547063 ~ 7560750 (-)
slc16a9b slc16a9 coding upstream 261189 7574076 ~ 7579872 (-)
tmem26b tmem26 coding upstream 491633 7804520 ~ 7809766 (-)
G192074 NA non-coding downstream 412955 6813165 ~ 6815435 (-)
G192075 sgms1 non-coding downstream 418632 6808205 ~ 6809758 (-)
G192062 NA non-coding downstream 428314 6799642 ~ 6800076 (-)
G192061 NA non-coding downstream 431884 6796111 ~ 6796506 (-)
G192070 NA non-coding downstream 438237 6789866 ~ 6790153 (-)
G192437 NA non-coding upstream 115700 7428587 ~ 7428883 (-)
G192545 NA non-coding upstream 316424 7629311 ~ 7630373 (-)
G192583 NA non-coding upstream 527476 7840363 ~ 7841460 (-)
G192584 NA non-coding upstream 528742 7841629 ~ 7841947 (-)
G192585 NA non-coding upstream 529173 7842060 ~ 7842634 (-)
itga3b itga3 other downstream 634000 6546941 ~ 6594390 (-)
LOC113527291 LOC108274042 other downstream 1437120 5768528 ~ 5791270 (-)
G191430 NA other downstream 1614436 5611120 ~ 5613954 (-)
gdpd3b gdpd3 other downstream 1737465 5484691 ~ 5490925 (-)
LOC113527048 LOC108274181 other downstream 2164972 5059498 ~ 5063418 (-)
ipmkb ipmk other upstream 87113 7400000 ~ 7418378 (-)
ccdc6b ccdc6,ccdc6b,LOC107695538,LOC107654058,LOC107727062,LOC107746455 other upstream 268463 7581350 ~ 7595881 (-)
ank3b ank3,LOC107746453,LOC107654059 other upstream 288331 7601218 ~ 7767512 (-)
si:dkey-94l16.4 LOC108273749 other upstream 1534775 8847662 ~ 8857748 (-)
LOC113527700 shisa6,LOC108273473,LOC108424875,LOC107706559 other upstream 2055330 9368217 ~ 9419487 (-)

Expression


Co-expression Network