ccdc6b (ccdc6,ccdc6b,LOC107695538,LOC107654058,LOC107727062,LOC107746455)


Basic Information

Item Value
gene id ccdc6b
gene name ccdc6,ccdc6b,LOC107695538,LOC107654058,LOC107727062,LOC107746455
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 7581350 ~ 7595881 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU227943
atgtttatGCCAGAGAACGTTAAAGGGAGTGAAAGTAATCGATTTCCTGTTAAGCCTCAGCTTTTGGGTTGATAGAGATTTTAGTGCACCTGTAATGCAAAAGAGAACTCTCATCCGCTTTGCTTACAGAAAAGGAAGATAGAATAATATGTGAGAAATGTCTAGTGATTTATGGCATTATTACATATAAATGAGTCTTCTAACAGTAACACACTAGACACATGCAGCCAGTCAGGTGCTGCcgagagctgcttttataggcACCAGATGGGTTGGTGGGAAAGTGCAGCTAATGGCTTTTAAGGGATGCAGAAGAGCAGCCATGCCCGAGGTGCAGAAGCAGGGAGCCTGTTCAGTTCGTGCCTAATGGCAAAACATGCTCATGCAGCAATAGGTGTTTGTTCGATCTAGATAAAAGAGCATGCATGAAATGCAGTCTGGGCTCGCTAGGGAGATGAATTGCTTTCTATACACATggttaattatatatatatatatttttttttgctaagagCGTGAAAGAATGGTTTACTTATATGCTGCTGTTGGTGTATTGCAGTTTGCATCTGACTAACTGTAAACATGTATTGATACACCAGTTTATTCTTTCTTAATGAGTTCGAATGAAATGCCTTGGACTAGGCAGAAGGACAGAGGTATGTACATTGTTCTCGTACCCAGTTCACCTCCACCCACATCCTACCCTTAACAGTGTCTGTAAATGGTACCACTGTGACTTTTTCTCCCCTCACACCCCTCATAATTTGTTCTCAAGTATAGATGTGTGGAttgtttttttggaaagaaaaaaaaaaaaaaaaagggaaggaaTTCCGCTATGTACACCCTCAAGGTATAAATCTGTCACAGAGAGAAAGTGTAAATAGACACACCCCCTTTTTGTAAGCTTTGCAAATTATGCTGGGCCAGAGAAATTGTCATTTTATGAAACAAATTTCTCCCCATGATTAGTATGTGTCTGTGATCTCGTCTTCGACCTTCTCGTCTGTGGGTGCCCCTGGttcttattcatttatacagCCTGTTCCACGTTACCAAATAGCATTCAGTTAGtgcagcttaaaaaaaaaaaaaggcagaacaaaaaacacagagcaCTTACTGTCTGTTGTGAAGAACGCTAATTTACTGCAAAATTACAGCTCAAAATGAAAATCAGCTCAGTGATAGAATTACTGGTACTAAGCAGCTCCGTTGTGGTTAAGGCACAGATGTTTAGTGAGGACACTGTCAGTGGCATCAGGCCTCTGCAGTGTTACGACACCACCTCCAGCACTGCTGTGTTTGTCATATAACACACCATTGTGGTGTTTGGGGGAACTGTCTCGATACAAATCCTGTTTGCAGTTCATAGATGTATCggtttctctcctcttcttttttttttttttttttcccttataagCAATTCCTTAAGAGACCCTGGAAACGTACAgggatttttcttttgtttacctttttatcatttcaatgtaaatatttgtttcaTTGTGTAAAGGAAAAAGAATAATTTGTTTTACCATGAGGTGTTGCGAGTGCATTTCAAGTTTGTGTTCAAATTTTACTAGAACGTAagatttttgctcattttggtTGCccttgtcattttctttttaagactGTTGACAAATGAATGTAATGTTTGCTCATGTTTTACTGCTATCTTCAGTGGATGGAACACCTTTGAGCCTTAACTCACTGTGGTATTGCTAAATGTAAGCATTATCTAGCTTATCCCCACATCAAATAATTAAAGCCTTAA
>XM_026914606.2
tgggaagagaagagaagggaagagaaaagaagagaatgaCGCTGCTGAGCTGCACATTGCTGCTGCTTGTCTCAGATGCTCACGGTGATCATGGCGGACAGCGCGAGTGAGAGTGACACTGATGGAGCGGGCAGCAGCTCGGCTACTCCCCAGTGCTCCacttcttcctcttccaacaAACAGCAGGGTTTCGTGATTTCCCCGTTTCGTCTGGAGGAGCTGACAAATCGCCTGGCGTCCCTGCAGCAGGAGAACAAAGTGCTCAAGATCGAGCTGGAGACGTTCAAACTGAAGTGTAAAGCCTTGCAGGAGGAGAACAGGGACCTGCGCAAAGCCAGCGTCACGATTCAAGCCCGAGCAGAACAAGAAGAGGAGTTCATCAGCAACACGCTGTTTAAGAAGATCCAGGCTTtgcagaaggagaaagaaaccCTCGCTGTCAATTATGAGAAGGAAGAAGAATTCCTCACCAATGAACTCTCTCGCAAACTTATGCAACTTCAACATGAGAAAGCTGAGCTTGAGCAGCACTTGGAACAAGAGCAGGAGTTCCAGGTCAACAAACTGATGAAGAAGATCAAGAAGTTAGAGAATGACACCATCTCTAAACAGCTCACCTTGGAGCAGctcagACGAGAGAAGATTGACTTGGAGAACACATTGGAGCAAGAGCAGGAGGCACTGGTCAACCGACTGTGGAAGCGGATGGACAAACTGGAAGCTGAGAAAAGGATTCTCCAGGAGAAGCTGGACCAGCCGGTCTCCGCTCCTCCATCCCCCAGGGACATCTCCATGGAGATCGACTCTCCGGAGAACATGATGAGACACATCCGTTTCCTGAAGAGTGAGGTGGAGAGGCTGAAGAAGAACCTGCGCACTGCCGAACTGCAGCACACAGAGAAGCGAGCTCAGTACATCGAGGAGGAGCGGATCATGCGGGAGGAGAACATTCGGCTGCAGAGGAAGCTGCAGCGGGAGGTGGAGCGGCGCGAGGCTTTGTGCAGGCAGCTTTCTGAAAGCGAGTCTAGCCTGGAGATGGATGACGAGAGGTACTTTAATGAAATGTCGGCCCAAGGCCTTCGTCCTCGAACTGTGTCCAGTCCGATCCCTTACACACCCTCCCCAAGCTCTAGCAGACCTATAtcaccagGGCTGTCATATGCCAGTCACACGGTGGGCTTTACCCCTCCAGCCACACTGACCCGTGCGGGCATGTCTTACTACAACACGCCAGGCCTACACGTGCATGTCGGAGCCTCACATGGCATTGCGAGGCCGTCCCCGAGAAGAAGCAACAGTCCGGACAAGTTCAAGCGCCCAACACCACCTCCTTCCCCCAACACGCAAGCTGGAGCTCAGCCTGgaccccctcctcctcctccgcccCCTGCAGCACCAGTGCAGCATCAGCAGCCCGCAGCACCACAGTCCTCACAGCCATAATGCATGAGCTCAGAGTGGACTCAGACCAGAGCTACTGTATTCCCGCCAAGCCAAAGGCTTATCTATCCTATGTACATGGAGTCAGCATCTTCCTCTTGCACTGAGAATCAAATAGGCTTCACTGTTAAtctgtgttgtattttttattttttttccttttccattttGGTTTTGAATGCAGTTCAGTGGTCTTGTGGCATTGATTGCAACACTAAacctgcttgtgttttttttttttttttttttccccactagaaGTACTCCTCtgaaagaaatgcagaaatgtttatGCCAGAGAACGTTAAAGGGAGTGAAAGTAATCGATTTCCTGTTAAGCCTCAGCTTTTGGGTTGATAGAGATTTTAGTGCACCTGTAATGCAAAAGAGAACTCTCATCCGCTTTGCTTACAGAAAAGGAAGATAGAATAATATGTGAGAAATGTCTAGTGATTTATGGCATTATTACATATAAATGAGTCTTCTAACAGTAACACACTAGACACATGCAGCCAGTCAGGTGCTGCcgagagctgcttttataggcACCAGATGGGTTGGTGGGAAAGTGCAGCTAATGGCTTTTAAGGGATGCAGAAGAGCAGCCATGCACACTCGGTCAGATGACCAATTAGCCCGAGGTGCAGAAGCAGGGAGCCTGTTCAGTTCGTGCCTAATGGCAAAACATGCTCATGCAGCAATAGGTGTTTGTTCGATCTAGATAAAAGAGCATGCATGAAATGCAGTCTGGGCTCGCTAGGGAGATGAATTGCTTTCTATACACATggttaattatatatatatatatttttttttgctaagagCGTGAAAGAATGGTTTACTTATATGCTGCTGTTGGTGTATTGCAGTTTGCATCTGACTAACTGTAAACATGTATTGATACACCAGTTTATTCTTTCTTAATGAGTTCGAATGAAATGCCTTGGACTAGGCAGAAGGACAGAGGTATGTACATTGTTCTCGTACCCAGTTCACCTCCACCCACATCCTACCCTTAACAGTGTCTGTAAATGGTACCACTGTGACTTTTTCTCCCCTCACACCCCTCATAATTTGTTCTCAAGTATAGATGTGTGGAttgtttttttggaaagaaaaaaaaaaaaaaaaagggaaggaaTTCCGCTATGTACACCCTCAAGGTATAAATCTGTCACAGAGAGAAAGTGTAAATAGACACACCCCCTTTTTGTAAGCTTTGCAAATTATGCTGGGCCAGAGAAATTGTCATTTTATGAAACAAATTTCTCCCCATGATTAGTATGTGTCTGTGATCTCGTCTTCGACCTTCTCGTCTGTGGGTGCCCCTGGttcttattcatttatacagCCTGTTCCACGTTACCAAATAGCATTCAGTTAGtgcagcttaaaaaaaaaaaaaggcagaacaaaaaacacagagcaCTTACTGTCTGTTGTGAAGAACGCTAATTTACTGCAAAATTACAGCTCAAAATGAAAATCAGCTCAGTGATAGAATTACTGGTACTAAGCAGCTCCGTTGTGGTTAAGGCACAGATGTTTAGTGAGGACACTGTCAGTGGCATCAGGCCTCTGCAGTGTTACGACACCACCTCCAGCACTGCTGTGTTTGTCATATAACACACCATTGTGGTGTTTGGGGGAACTGTCTCGATACAAATCCTGTTTGCAGTTCATAGATGTATCggtttctctcctcttcttttttttttttttttttcccttataagCAATTCCTTAAGAGACCCTGGAAACGTACAgggatttttcttttgtttacctttttatcatttcaatgtaaatatttgtttcaTTGTGTAAAGGAAAAAGAATAATTTGTTTTACCATGAGGTGTTGCGAGTGCATTTCAAGTTTGTGTTCAAATTTTACTAGAACGTAagatttttgctcattttggtTGCccttgtcattttctttttaagactGTTGACAAATGAATGTAATGTTTGCTCATGTTTTACTGCTATCTTCAGTGGATGGAACACCTTTGAGCCTTAACTCACTGTGGTATTGCTAAATGTAAGCATTATCTAGCTTATCCCCACATCAAATAATTAAAGCCTTAATAATGTGG

Function

symbol description
ccdc6b Orthologous to human CCDC6 (coiled-coil domain containing 6).
ccdc6 Enables identical protein binding activity. Predicted to be involved in cytoskeleton organization. Located in cytosol.

NR:

description
PREDICTED: coiled-coil domain-containing protein 6

GO: NA

KEGG:

id description
K09288 CCDC6, PTC; coiled-coil domain-containing protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
TU227943 False 1783 lncRNA 0.39 2 7581358 7583165
XM_026914606.2 True 3541 mRNA 0.45 9 7581350 7595881

Neighbor

gene id symbol gene type direction distance location
slc16a9b slc16a9 coding downstream 1478 7574076 ~ 7579872 (-)
fam13c fam13c coding downstream 20600 7547063 ~ 7560750 (-)
zgc:171971 LOC108273425 coding downstream 138638 7435509 ~ 7442712 (-)
ube2d1b ube2d1,ube2d1b,LOC106607701,LOC105891213,LOC107717106,LOC107553913,LOC107733527,LOC105010549 coding downstream 153516 7421966 ~ 7427834 (-)
pcdh15b pcdh15b,pcdh15,LOC107695531,LOC107654051,LOC108273410,LOC108411428 coding downstream 349275 7047571 ~ 7232075 (-)
tmem26b tmem26 coding upstream 208639 7804520 ~ 7809766 (-)
egr2b egr2,egr2b,LOC107739063,LOC107596614,LOC107653961,LOC107596611,LOC107593522,LOC107745678 coding upstream 383675 7979556 ~ 7990069 (-)
jmjd1cb jmjd1c,jmjd1cb,LOC108412835 coding upstream 425653 8021534 ~ 8141060 (-)
LOC113527613 cyp26a1,LOC108273895,LOC108412396,LOC103044660,LOC107745679,LOC107653962 coding upstream 602203 8198084 ~ 8201220 (-)
exoc6 exoc6,LOC107654070 coding upstream 612063 8207944 ~ 8261110 (-)
G192437 NA non-coding downstream 152467 7428587 ~ 7428883 (-)
G192385 NA non-coding downstream 268463 7228390 ~ 7312887 (-)
G192074 NA non-coding downstream 765915 6813165 ~ 6815435 (-)
G192075 sgms1 non-coding downstream 771592 6808205 ~ 6809758 (-)
G192062 NA non-coding downstream 781274 6799642 ~ 6800076 (-)
G192545 NA non-coding upstream 33430 7629311 ~ 7630373 (-)
G192583 NA non-coding upstream 244482 7840363 ~ 7841460 (-)
G192584 NA non-coding upstream 245748 7841629 ~ 7841947 (-)
G192585 NA non-coding upstream 246179 7842060 ~ 7842634 (-)
G192611 NA non-coding upstream 278885 7874766 ~ 7877699 (-)
ipmkb ipmk other downstream 162972 7400000 ~ 7418378 (-)
itga3b itga3 other downstream 986960 6546941 ~ 6594390 (-)
LOC113527291 LOC108274042 other downstream 1790080 5768528 ~ 5791270 (-)
G191430 NA other downstream 1967396 5611120 ~ 5613954 (-)
gdpd3b gdpd3 other downstream 2090425 5484691 ~ 5490925 (-)
ank3b ank3,LOC107746453,LOC107654059 other upstream 5337 7601218 ~ 7767512 (-)
si:dkey-94l16.4 LOC108273749 other upstream 1251781 8847662 ~ 8857748 (-)
LOC113527700 shisa6,LOC108273473,LOC108424875,LOC107706559 other upstream 1772336 9368217 ~ 9419487 (-)
trnam-cau_28 NA other upstream 1919933 9515814 ~ 9515885 (-)
trnar-ucg_9 NA other upstream 1920191 9516072 ~ 9516144 (-)

Expression


Co-expression Network