G192545


Basic Information

Item Value
gene id G192545
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 7629311 ~ 7630373 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU227946
ccaaggCTCTCTTTACTACAAACACCCTTTACTACTGTTGTACTACTAATCTTCATCAAGAAACGTCTAAAATACAGCAGTGTCTGTCCATCAGGGTGCAACCTATAGTAAGACATTTTCCTCTTAAATGTGCCCATTAATTATGTCAGGGAAAGGAGCAACTTCAACAAATCATGATTGCAAGGATGAACCGCTAGAGGGCCATAAAAGGATCAAAAAGAGGatactatacatacatatatacatatatatatatatataagcatataAGGTTTGTTGCTTTCTTGTTTCTGAACCCTCAAATCTGAGACTGTATTAAATCTATATTACTATTGTGTATTTACTTACATTCTTATATTCTACTTATATTCAACATATGTCTTTTTGTTGCCCCATTGTGAAGCCTAGGTAGAAGTACCCACATATGATAGATAAATGGTATTGAATTCATAGGCATACAATAGACATCTGTAATAAAGGCTTTTTCATTATTCAGAAGAGTGCCTTATTATTTGAACAATTTCTTCAACAAAGAGCGCCTCTAAACCACTGAACATTCCAGTTTCTCTCGTTTGCCTTcttagggctgtattcagagttggccaCTTAAGATTAAAAGTTACATATGTATTTACATGAGGAAAGttactcgtattcagagtcgggttatgcAGCTCAAATTGTTGTCGAATTTTTGGACAGCTCattcaaatgattaaaattaccTGCATATAGTTCAGGacctgaggttgccagatttgtcttcagtagaagcattttaaaaaattttttttgttttcaataGTGTCTACAGACTTTTAACACAatcacttgcctttaagcccaCACAAAAAAGAGGAGTGAAGAAGGaactggtgtttttttctttgctgtcaaatggaATGTTATgtcttaaaatgtttaaaaatgtttacaatttaaaaatgaaaaataaaacagactatgatgatatactgtatgaatgagaagatggcaagcttttaaataaacatctaatcaCATTAATTGGGTTCATGTCTCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU227946 True 1043 lncRNA 0.33 2 7629311 7630373

Neighbor

gene id symbol gene type direction distance location
slc16a9b slc16a9 coding downstream 49439 7574076 ~ 7579872 (-)
fam13c fam13c coding downstream 68561 7547063 ~ 7560750 (-)
zgc:171971 LOC108273425 coding downstream 186599 7435509 ~ 7442712 (-)
ube2d1b ube2d1,ube2d1b,LOC106607701,LOC105891213,LOC107717106,LOC107553913,LOC107733527,LOC105010549 coding downstream 201477 7421966 ~ 7427834 (-)
pcdh15b pcdh15b,pcdh15,LOC107695531,LOC107654051,LOC108273410,LOC108411428 coding downstream 397236 7047571 ~ 7232075 (-)
tmem26b tmem26 coding upstream 174147 7804520 ~ 7809766 (-)
egr2b egr2,egr2b,LOC107739063,LOC107596614,LOC107653961,LOC107596611,LOC107593522,LOC107745678 coding upstream 349183 7979556 ~ 7990069 (-)
jmjd1cb jmjd1c,jmjd1cb,LOC108412835 coding upstream 391161 8021534 ~ 8141060 (-)
LOC113527613 cyp26a1,LOC108273895,LOC108412396,LOC103044660,LOC107745679,LOC107653962 coding upstream 567711 8198084 ~ 8201220 (-)
exoc6 exoc6,LOC107654070 coding upstream 577571 8207944 ~ 8261110 (-)
G192437 NA non-coding downstream 200428 7428587 ~ 7428883 (-)
G192385 NA non-coding downstream 316424 7228390 ~ 7312887 (-)
G192074 NA non-coding downstream 813876 6813165 ~ 6815435 (-)
G192075 sgms1 non-coding downstream 819553 6808205 ~ 6809758 (-)
G192062 NA non-coding downstream 829235 6799642 ~ 6800076 (-)
G192583 NA non-coding upstream 209990 7840363 ~ 7841460 (-)
G192584 NA non-coding upstream 211256 7841629 ~ 7841947 (-)
G192585 NA non-coding upstream 211687 7842060 ~ 7842634 (-)
G192611 NA non-coding upstream 244393 7874766 ~ 7877699 (-)
G192665 ado non-coding upstream 343841 7974214 ~ 7977154 (-)
ccdc6b ccdc6,ccdc6b,LOC107695538,LOC107654058,LOC107727062,LOC107746455 other downstream 33430 7581350 ~ 7595881 (-)
ipmkb ipmk other downstream 210933 7400000 ~ 7418378 (-)
itga3b itga3 other downstream 1034921 6546941 ~ 6594390 (-)
LOC113527291 LOC108274042 other downstream 1838041 5768528 ~ 5791270 (-)
G191430 NA other downstream 2015357 5611120 ~ 5613954 (-)
si:dkey-94l16.4 LOC108273749 other upstream 1217289 8847662 ~ 8857748 (-)
LOC113527700 shisa6,LOC108273473,LOC108424875,LOC107706559 other upstream 1737844 9368217 ~ 9419487 (-)
trnam-cau_28 NA other upstream 1885441 9515814 ~ 9515885 (-)
trnar-ucg_9 NA other upstream 1885699 9516072 ~ 9516144 (-)
LOC113527759 LOC108273488 other upstream 1956793 9587166 ~ 9590116 (-)

Expression


Co-expression Network