G192583


Basic Information

Item Value
gene id G192583
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 7840363 ~ 7841460 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU228003
TGCTTTCTCATTTGTTTGCCGACGCCAACGCTGGAGCTTCTTTCATCAACAGGAAGGGGAATTATCACAATTCGGTATTCTGGCCTTCATTGTGTTGAGACTGCCAGATGCCTGGAGTCATTCAGCAACCACAAAAGGCCTGTGACTCCCAATTTGAATCAAAGAGGTATTTTGAGAAATATCGCACTCATTTGTTTAAAAGGAGAACGTGTAAATTTCTTTCTAAACTGCTTTTCTGACTCGTTATCATGGTTGAAGCCGGAGGCAAAAACACATGTTACATACACCAGGCATCTCGATTTGAATGTGGTATTATTCCGGCAGGCCTTCAGAAAGGAGCGGATTAGGTTTCGCAGGGCAGCACAGATCCACGCTCATGTGCAGAAGGAAGTACTCACAAAGGCATTTGATGGCAATTAATAACATTGAGAATGAGATTGGAAGTAGAGTGGGGGAAAGAGGGAGGTCTGCACTGGTGCAGAAACAAGGAAACAGTCTGAATTTCAATGCTGATGCATTACAAGATAAACAGCACACTGCTCTCAGCAAATCTgaccttctttttcttttccacccTTTTCTATTGCATAACACACTGAAACGCTTCACATGAGAGATTAAGTCTCGCAGTGTCACTACCAAAAAGCCGTTGTTGTTTCAAGTGAGCTGgttgtgaaatattttacacagaaaTCTTTTTGATTCATGCTGCTTTATTGACAGGAAGCGCTGTTTTTCATTAAACCCATAAATCGATTTTGGCGTGCTTGAGTAAGACGCGCAAAACTTAAACAGAAATACCATcaattttgaatttgtttgaCAGCTAACCATGtcttttacaaaaaatataaacaaagctTTCTTTCTGACTTGTAGCTCCGAGGCAAACACTTAGTGGCACAGATTGAGGCAAGACTGTACAGAGTGAAATGTAAACACGTCCCATAAAGCACATGTTTACGCCACCACAAAAGAGAGGGCAATTAAAGACTGAGATTGTGCACTGGACTGAGAGGGACTCCCCGAGGAACACGAGCCAGGCTTGTTTCATTAAGCCTTGAACTCGCTGCTTGTAAGACGATGACAGCAAAGCTG

Function

NR:

description
PREDICTED: uncharacterized protein LOC107661584 isoform X2

GO: NA

KEGG:

id description
ko00830 Retinol metabolism
ko00982 Drug metabolism - cytochrome P450

RNA

RNA id representative length rna type GC content exon number start site end site
TU228003 True 1098 lncRNA 0.42 1 7840363 7841460

Neighbor

gene id symbol gene type direction distance location
tmem26b tmem26 coding downstream 30597 7804520 ~ 7809766 (-)
slc16a9b slc16a9 coding downstream 260491 7574076 ~ 7579872 (-)
fam13c fam13c coding downstream 279613 7547063 ~ 7560750 (-)
zgc:171971 LOC108273425 coding downstream 397651 7435509 ~ 7442712 (-)
ube2d1b ube2d1,ube2d1b,LOC106607701,LOC105891213,LOC107717106,LOC107553913,LOC107733527,LOC105010549 coding downstream 412529 7421966 ~ 7427834 (-)
egr2b egr2,egr2b,LOC107739063,LOC107596614,LOC107653961,LOC107596611,LOC107593522,LOC107745678 coding upstream 138096 7979556 ~ 7990069 (-)
jmjd1cb jmjd1c,jmjd1cb,LOC108412835 coding upstream 180074 8021534 ~ 8141060 (-)
LOC113527613 cyp26a1,LOC108273895,LOC108412396,LOC103044660,LOC107745679,LOC107653962 coding upstream 356624 8198084 ~ 8201220 (-)
exoc6 exoc6,LOC107654070 coding upstream 366484 8207944 ~ 8261110 (-)
adam8b LOC108273892 coding upstream 428131 8269591 ~ 8282862 (-)
G192545 NA non-coding downstream 209990 7629311 ~ 7630373 (-)
G192437 NA non-coding downstream 411480 7428587 ~ 7428883 (-)
G192385 NA non-coding downstream 527476 7228390 ~ 7312887 (-)
G192074 NA non-coding downstream 1024928 6813165 ~ 6815435 (-)
G192075 sgms1 non-coding downstream 1030605 6808205 ~ 6809758 (-)
G192584 NA non-coding upstream 169 7841629 ~ 7841947 (-)
G192585 NA non-coding upstream 600 7842060 ~ 7842634 (-)
G192611 NA non-coding upstream 33306 7874766 ~ 7877699 (-)
G192665 ado non-coding upstream 132754 7974214 ~ 7977154 (-)
G192685 NA non-coding upstream 230462 8071922 ~ 8126557 (-)
ank3b ank3,LOC107746453,LOC107654059 other downstream 72851 7601218 ~ 7767512 (-)
ccdc6b ccdc6,ccdc6b,LOC107695538,LOC107654058,LOC107727062,LOC107746455 other downstream 244482 7581350 ~ 7595881 (-)
ipmkb ipmk other downstream 421985 7400000 ~ 7418378 (-)
itga3b itga3 other downstream 1245973 6546941 ~ 6594390 (-)
LOC113527291 LOC108274042 other downstream 2049093 5768528 ~ 5791270 (-)
si:dkey-94l16.4 LOC108273749 other upstream 1006202 8847662 ~ 8857748 (-)
LOC113527700 shisa6,LOC108273473,LOC108424875,LOC107706559 other upstream 1526757 9368217 ~ 9419487 (-)
trnam-cau_28 NA other upstream 1674354 9515814 ~ 9515885 (-)
trnar-ucg_9 NA other upstream 1674612 9516072 ~ 9516144 (-)
LOC113527759 LOC108273488 other upstream 1745706 9587166 ~ 9590116 (-)

Expression


Co-expression Network