G192585


Basic Information

Item Value
gene id G192585
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 7842060 ~ 7842634 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU228005
ACTATGACTCAGAAGGACCATGTTGTTTCTAATCATGGGACAAAGAAAGTTACAGTCTGGCTCTGTCTGTAATGACCTTTTTATGGGCTTCTGGTTTATGGACAGGAAGcataaagtgttcagtgtacaCTCTCAGCTTGAATAAATGTAACACATCTATTGGATGCTTTCAAACGCTCTGGGTAATTTTATCTTATCAGTGTAATCGAGTGCTGCTTGCAAGAATCTGACCTCAAAAACTCTAACCTTTGTGGTAATGTGTGAGCAACCAGAGGTGTGTTGAGTCATTCATATGGCTGCACTTTCAAAGTGACAGGGGATGTGGCAATTTCAACAGGtacaaacacatttcactgcATTCCTTCCACtgtaattgaaaaaataaactaGACTGCCTAtaaaaatgaggaaataaaGGCACGGGGTGGAGGAAttagtaacacacacatgagaaaaaatgtattatgtaatGGCACTGAACAAGGCTTGAAAAGAATCTGAAGTGTAACAACAGATAATGAGGCTGAACTATAGGTCGCGCTCTGCGCTGAAACACACAGGAAGCATGCTGTTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU228005 True 575 lncRNA 0.40 1 7842060 7842634

Neighbor

gene id symbol gene type direction distance location
tmem26b tmem26 coding downstream 32294 7804520 ~ 7809766 (-)
slc16a9b slc16a9 coding downstream 262188 7574076 ~ 7579872 (-)
fam13c fam13c coding downstream 281310 7547063 ~ 7560750 (-)
zgc:171971 LOC108273425 coding downstream 399348 7435509 ~ 7442712 (-)
ube2d1b ube2d1,ube2d1b,LOC106607701,LOC105891213,LOC107717106,LOC107553913,LOC107733527,LOC105010549 coding downstream 414226 7421966 ~ 7427834 (-)
egr2b egr2,egr2b,LOC107739063,LOC107596614,LOC107653961,LOC107596611,LOC107593522,LOC107745678 coding upstream 136922 7979556 ~ 7990069 (-)
jmjd1cb jmjd1c,jmjd1cb,LOC108412835 coding upstream 178900 8021534 ~ 8141060 (-)
LOC113527613 cyp26a1,LOC108273895,LOC108412396,LOC103044660,LOC107745679,LOC107653962 coding upstream 355450 8198084 ~ 8201220 (-)
exoc6 exoc6,LOC107654070 coding upstream 365310 8207944 ~ 8261110 (-)
adam8b LOC108273892 coding upstream 426957 8269591 ~ 8282862 (-)
G192584 NA non-coding downstream 113 7841629 ~ 7841947 (-)
G192583 NA non-coding downstream 600 7840363 ~ 7841460 (-)
G192545 NA non-coding downstream 211687 7629311 ~ 7630373 (-)
G192437 NA non-coding downstream 413177 7428587 ~ 7428883 (-)
G192385 NA non-coding downstream 529173 7228390 ~ 7312887 (-)
G192611 NA non-coding upstream 32132 7874766 ~ 7877699 (-)
G192665 ado non-coding upstream 131580 7974214 ~ 7977154 (-)
G192685 NA non-coding upstream 229288 8071922 ~ 8126557 (-)
G192681 NA non-coding upstream 248051 8090685 ~ 8095357 (-)
G192881 sun1 non-coding upstream 536593 8379227 ~ 8383599 (-)
ank3b ank3,LOC107746453,LOC107654059 other downstream 74548 7601218 ~ 7767512 (-)
ccdc6b ccdc6,ccdc6b,LOC107695538,LOC107654058,LOC107727062,LOC107746455 other downstream 246179 7581350 ~ 7595881 (-)
ipmkb ipmk other downstream 423682 7400000 ~ 7418378 (-)
itga3b itga3 other downstream 1247670 6546941 ~ 6594390 (-)
LOC113527291 LOC108274042 other downstream 2050790 5768528 ~ 5791270 (-)
si:dkey-94l16.4 LOC108273749 other upstream 1005028 8847662 ~ 8857748 (-)
LOC113527700 shisa6,LOC108273473,LOC108424875,LOC107706559 other upstream 1525583 9368217 ~ 9419487 (-)
trnam-cau_28 NA other upstream 1673180 9515814 ~ 9515885 (-)
trnar-ucg_9 NA other upstream 1673438 9516072 ~ 9516144 (-)
LOC113527759 LOC108273488 other upstream 1744532 9587166 ~ 9590116 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G37008 NA non-coding NC_053115.1 CM020912.1 9230470 ~ 9230956 (-)
mexican tetra (Astyanax mexicanus) G36805 NA non-coding NC_035900.1 CM008303.1 16243077 ~ 16243333 (-)