G192650


Basic Information

Item Value
gene id G192650
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 8069143 ~ 8071592 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU228075
TAATGCTTCCAAACCAACCATGtagagacaaaaaacaaaatctgctgctgctgtagcctCGTGGctaccttccttcctttccaATGCAAAGCACCTGCTTTACACACGCTGACATTTCAACTAATAAGAGTGTAACCCTTCTGCCTTGCTATCTTTGCATAATCATTTGAACTAGTCAAATTGCCATGCTCTGTTAAGATGCCGTGGTAGCAGTTGCACAGTGCAGTGATTACTTGCCTTTGCATAATTAGCATAGCAGCGGTACTCCTGCCCAGCCGACCGTAGCACAGCTTATCTCCAGACAAAACACTACCAGTTCAGGCCTTGACATGTTAAACTGAAAGGGGTTGTTGTTTCACAGACTGAACACTCCTTCCTGATCAATACTGCAGTGTAATCTTTACCTCCTACTAGAGGAGGAGGATTAAGGCACGATGACTGACGGGAGTGAATGGTGCAGTAAAATCTGTTCTGTTGATTGTGGAGACACGCAGCCGGCTAATCTGTCTGCCAGCTTCCTGACACACTAGCATGAACGTGGCCTCAGATGCCACTAAGCAAATCTCCACAAGCCTGGGCACCAGTTACCTGGCTAAAGCTGCCCTCCATGCTGAgttcatcatttcatttcagctcaactctctcctgctctctccttAAACACTATtcaaattttcataatatttatgagAAAGCAAAATTTCCCATTCGAATCTAAAAGATTCCATGTTCTACCCAGAACCATCAAAactcaaaaactgaaaaatctcTGCATAAATGCGTCCTACTTTATTTGCACGTTTTTAATTATGCATAACTTTTCTAATCCATTACAGAAAATGATATTCAAAGTGACATTACATATAAGTAGTTACACTTGAATctcaaatgtctttttattgAGCATTTAGTGAACTTACTGTAGGTTTTACAATGCCATTATATTACACCCTAAGAAGTGAGCGCATGTAGGGTCATATGCATTGacaacttaagtccaaaagtcaCGTCAatgtttacacaaaaaaaggtacttgtattcagagtcgagttACACAGTTTAAATCATATTTCTGGTTGCCTAATTGAGATAATGCAAATCATCTGCATGTAGTTCATGTAGTATGGTTGCTAGATTTTTCTTGATCTGAGTTTTTCAATAACATCTTTAAACACAaccactctttctcttttttttcctctttgctgtcaaatgcagtaagatgtaacataaaagtaagggacactttaaaaatgaaaaatgactaatatgatgatatacaaATGAGAAGACAGtgagcactgaaataaacagtTAACAGGAGTCTAGCATATTGTGAAAATATTGCTGTGTGAATATTGTTAGTTGTAATAATCACATTAATCtcttgtggttacatcaaactgtcagacaagTAAGTTCAAGGACAGAACTGCATGTATGTGAGAAACGTCTCTGTTTTGTGTTATCTCCACCCATCGTATGCAGCTCTCATATAACTCTCTAGACAGCGCTTAAGCCCATAGtcatgtctgaggtctgaataccgaTGTGCGCAATttcggtattaaatcctcactaaaCGTGCTTAACTTAACTCTTAATAAGGTGGACAGGAAGCCTTTGGCAATATGACCCGTGTTTCAAAAgggcttaatttaaaaaaatagaataaaatctaTTACTAAGACCACAAAAtcgtgtaattttttttttttacataagaaATCTTCTGTGGTTTATGTGTTACAGATGCACAGTGTTAATGTTTGCTCTGCACAAAATTAAAGCCTAAATAACATACAAATGCATTTGAGCATTAATACTTCACTGACaatcaaaaatcattttaaaggaaCTACTGGACCTAGATTACAGTGACATgaacatgttaataataaaccAAGACTGGAAAAGTTACAGTACAGTTTCTACTTGGCTGAAGAGAAGGGAAAGTATGAGGAGGAAGTGAGCATTGTGTTCTGAAACCCCGCTCACCTGACCCAGAAATCCCTCTAACACCCAACTCTCCATCTGCCACTCTCGCCCAGATTAACGCTGCCACACAAAccctacacccacacacacaaacacacacttaaaaacCCGGTGCACTTTAGTTActgcacagcaacaacaatagcTCATGAAATGGGAAGAAACCATACCacatagacaaacacacagtcacaaacaggatgttttgtgtgtgtgtgtgtgtgtttgagcacaATGCACATGTAAAGACAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU228075 True 2251 lncRNA 0.39 2 8069143 8071592

Neighbor

gene id symbol gene type direction distance location
nrbf2b nrbf2 coding upstream 49929 8011864 ~ 8019214 (+)
adoa ado coding upstream 91975 7974219 ~ 7977168 (+)
arid5b arid5b,LOC107727057 coding upstream 130529 7852411 ~ 7938614 (+)
cabcoco1 c13h10orf107 coding upstream 230717 7812450 ~ 7838426 (+)
rhobtb1 rhobtb1,LOC107654062,LOC107727061,LOC107745661 coding upstream 273243 7772344 ~ 7795900 (+)
reep3b reep3,LOC108412837 coding downstream 77687 8149279 ~ 8177199 (+)
tubgcp2 tubgcp2,gcp2,LOC106589265 coding downstream 240529 8312121 ~ 8324525 (+)
myof myof coding downstream 254560 8326152 ~ 8358172 (+)
zgc:152977 sun1 coding downstream 287831 8359423 ~ 8393594 (+)
LOC117595680 rac1,RAC1,LOC108273830,LOC108437155,LOC105898786,LOC108412270 coding downstream 324241 8395833 ~ 8401469 (+)
G192591 NA non-coding upstream 129559 7939041 ~ 7939584 (+)
G192422 NA non-coding upstream 594139 7474437 ~ 7475004 (+)
G192394 NA non-coding upstream 669515 7399343 ~ 7399628 (+)
G192043 NA non-coding upstream 1283547 6778164 ~ 6785596 (+)
G192029 NA non-coding upstream 1372173 6696732 ~ 6696970 (+)
G192644 NA non-coding downstream 55181 8126773 ~ 8141060 (+)
LOC117598703 NA non-coding downstream 187622 8259214 ~ 8261423 (+)
G192716 NA non-coding downstream 197556 8269148 ~ 8270226 (+)
G192737 NA non-coding downstream 239286 8310878 ~ 8388117 (+)
G192760 NA non-coding downstream 442790 8514382 ~ 8515934 (+)
G192484 ank3 other upstream 441032 7605981 ~ 7628111 (+)
tfam tfam other upstream 632771 7428545 ~ 7436372 (+)
asah2 asah2,LOC107598643 other upstream 1232760 6822740 ~ 6836383 (+)
LOC113527389 NA other upstream 1340752 6725321 ~ 6728391 (+)
G191581 NA other upstream 2085906 5969743 ~ 5983237 (+)
LOC113527534 dnah9 other downstream 1196901 9268493 ~ 9357961 (+)
G193383 LOC108273473 other downstream 1296651 9368243 ~ 9369915 (+)
trnaq-cug_13 NA other downstream 1440577 9512169 ~ 9512401 (+)
trnaq-cug_14 NA other downstream 1440968 9512560 ~ 9512631 (+)
mrpl58 mrpl58 other downstream 1441192 9512784 ~ 9515616 (+)

Expression


Co-expression Network