G192760


Basic Information

Item Value
gene id G192760
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 8514382 ~ 8515934 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU228231
cccACCACAAAGATTATTACTGTAAAGCAAGCATCATATTTAACATGAActaattattactaattattatgTTAACTTCATTGTGCTTTTGGGCCATGGATATCAGGGTGTGACTAGAAGtaggaaatgtttaaaatagaaGGCAAATCCTAAAATAGAGCAGGAAGTAGAAAAAGACATACGGCTTAAGATTTATTAATTGGTAGTTTTCTTGTCCTGGTTTCACATTGTCTATGAAGATAAAgaagatgtgtatgtgtgtgatatcTATGTGCTCAATATGTTGTGTTTCCATAAACCTGATAAATTTACAAAACctgACCGTTGCTGATATCTGAGCCTCGGGTAGAACTATTGTGACCTCTGAGAAGTGTACAAGCCAGACAAAGGTTTTCTTAAACTCTATATCAAAGTGTAACTCTTTCTATATACGTTTTGTAGCAGCACCATTAAAACATCAGCAGTACATATaataatgagcaaaaatgatgcaaaaaagaTCACAAAAGATCACAAGTTGTCATGTACGGCACATAAAGACTTAAAGGGAAATAATCGTTTTCAGTTAGGTCTATATCTGCAATAAAAGATGAGATCTGAAGCTCTAGCTTGGCTGTGCTATAAATATCCTTATTGCGATTCCAGTTTATTCAGACAGTCCCCTCACTGCCTTATTATTACTGATGCCTGCTGGGAGATTTGGCAATTCCTTTGGAGGACAAATCTCACAGTCCTGGGAAGCTGAACATGGAAAATTCACAGTATTCGTCTGCATTTAACTTGACTTGGCTCTGTTCATCTCTAAGTCCTTTTTGCTATTTTGGATGTAAGTGAAAATCTCATTGAAAAGCGTTTTGTACTCAGGCAGCTGAGCACAGTCCTGAGAACGTGTGTGTTTAACTGGATTTAGGATCGAGTGCTGATTGGTTGTGGCTGTCTGCACAGCTTTGTCACACTGTGACTGTGAACCACCTTCACAGCGGCGCAGGAGTGCATTGTATTTTCTCTGTAAGGCGTTGTACTGTGCATCCACCTCATTTAGCAGTGATATGCCATGGCTCTTCACTGTCTCTAAATGCCCCCTATAGGCATCAGTGTGTTCTTCATTCCTCAGCTCCTCATCCTTGCTGCCAGCTTCCAGCAGCTCCCTCTCGCTGTTGCAGCGCTTCAGCACTTGCCTTGTCTCCCACATCTCACTCACTTCCTCCTCTGCAGGGAAGAACAGAGTGCCTGGAAGCATGCGTGAGTCTGTTGCGGAACGCAACAGCTGCCGTAGTTCCTCAACTTCAGCCTCTACCTCAGCCAGACGAGCCTTATAGCCCTCCAGCAGAGTCACACGTGGCTCCAGCTCAGTGATCTCTCGGGCCAGAGCCTCGGCCTCCTGTTCAGCAGTCTCTCTTAGGGTTCGCTCTAAATCCAGCTGGGCCTGTAGTGAGTGCACTGAGTGCAAAAGGGCTGTGTGCTCTTCCTCTTCCCACTCATCTGCCTCTGGAGAGGGAGTGCTCGCAGATACAGAGTACTCATTGGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU228231 True 1529 lncRNA 0.44 2 8514382 8515934

Neighbor

gene id symbol gene type direction distance location
polr3e polr3e,LOC107693644,LOC107562668 coding upstream 1694 8495119 ~ 8512688 (+)
eef2k eef2k coding upstream 22223 8479443 ~ 8492159 (+)
mosmob c13h16orf52,cunh16orf52,C20H16orf52,c16orf52.L,c17h16orf52,LOC105910214,LOC107569180,LOC106518731 coding upstream 40562 8465631 ~ 8473820 (+)
LOC113527605 LOC108274277,LOC108412267,LOC107753296,LOC107695555,LOC107569185,LOC107745655,LOC107684747 coding upstream 49730 8452207 ~ 8464652 (+)
LOC113527452 rac1,RAC1,LOC106601744,LOC105898786,LOC105026138,LOC108239271,LOC107376513 coding upstream 74022 8433184 ~ 8440360 (+)
mettl9 mettl9 coding downstream 6574 8522508 ~ 8525058 (+)
kdelr2b kdelr2,LOC105888905,LOC100710456,LOC106589518,LOC108235823,LOC103354828 coding downstream 10734 8526668 ~ 8532202 (+)
daglb daglb,LOC107720234 coding downstream 18844 8534778 ~ 8545529 (+)
spag9b spag9,LOC108273832 coding downstream 30872 8546806 ~ 8589467 (+)
tob1b LOC108274231,LOC107595632,LOC108443190,LOC107719743,LOC107653989,LOC103025012,LOC107693641,LOC107562678 coding downstream 110865 8626799 ~ 8630357 (+)
G192737 NA non-coding upstream 126265 8310878 ~ 8388117 (+)
G192716 NA non-coding upstream 244156 8269148 ~ 8270226 (+)
LOC117598703 NA non-coding upstream 252959 8259214 ~ 8261423 (+)
G192644 NA non-coding upstream 373322 8126773 ~ 8141060 (+)
G192650 NA non-coding upstream 442790 8069143 ~ 8071592 (+)
LOC117598667 NA non-coding downstream 80720 8596654 ~ 8601770 (+)
G192858 NA non-coding downstream 402106 8918040 ~ 8918245 (+)
G193170 NA non-coding downstream 541465 9057399 ~ 9093247 (+)
G193169 NA non-coding downstream 642225 9158159 ~ 9158568 (+)
G193168 NA non-coding downstream 643499 9159433 ~ 9184089 (+)
G192484 ank3 other upstream 886271 7605981 ~ 7628111 (+)
tfam tfam other upstream 1078010 7428545 ~ 7436372 (+)
asah2 asah2,LOC107598643 other upstream 1677999 6822740 ~ 6836383 (+)
LOC113527389 NA other upstream 1785991 6725321 ~ 6728391 (+)
G191581 NA other upstream 2531145 5969743 ~ 5983237 (+)
LOC113527534 dnah9 other downstream 752559 9268493 ~ 9357961 (+)
G193383 LOC108273473 other downstream 852309 9368243 ~ 9369915 (+)
trnaq-cug_13 NA other downstream 996235 9512169 ~ 9512401 (+)
trnaq-cug_14 NA other downstream 996626 9512560 ~ 9512631 (+)
mrpl58 mrpl58 other downstream 996850 9512784 ~ 9515616 (+)

Expression


Co-expression Network