G193168


Basic Information

Item Value
gene id G193168
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 9159433 ~ 9184089 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU228720
ttggtgtttattgAAGTTTTAATAGTACAGTGGTGGAGACATACTGAGACGGTTTACATTGTAAAGCTGTTCAGTGGCCAAGCAGTACAAAAGCTTTTTGtcacatctatatatttcttccccaggagaaaaaaaaatgaagacaaaaacaacacaaatttgTTTTCTTCAGCAAGACAGAGCAATCATGTGTACTGGACAGATGTTATGGAATGATGgaactctctctcactcatccgGTTGGCTAGGAGTAGTGTGTGGTAAGACTGGAATTGATGCACAATGTGTCATTAAAATTTTGATCCAGCACTACAGACCATTAGGTAAAAAAGGAGAACATGGCTGAGTGAGTGCTTGGTCTGTTATAAGTTTCTTCACTGGCATAatggaggtaaaaaaaaacccaaaacatttCTTAGTGATACAGTCCTCCATACCGCAGTGGATGgacatatatattataaatccaATGCAGATTCGTTACATTCTCCTATTCCAAAGCTCAGTCTCTGTAAACCTGTTGTGTAGAAGGATTTGTACAAAAGTAAAGCTATTACAGTCCACGAAATCAAAGATGAACCGGTTCTGTTGCTTTTTGTCTctgataaaaagtaaataaattgaatCTTCTACTTGATCTGTGAAGCCCTAAATGAAGGTTAAATACACTAACATAAGGCCACAGTGGGAATGCTCTTATCACTGTGCTGTTCATTTACATTCAATATTTAAATGGTTTATATGGTCAAAAGAGGGGAAATCTGAGGATAGTGTGCAGTGTTAACAACATAAATTGTTCATTGGTGTGGAAATTGAGAATGTTTGGTGATCATTGCTGGCGCTTAAGTCCTCCACCAATCCAAATATGACAAAATCCATTCAAATGTCTTGTAGCACACACAAATCTGCTCTGTTCACAGTTTAAATCGTCAAAGTGAACTTGATTTTCCTCCCACTAATCAGGCACCCAGGCGACAATACACAAagatgcattattattttttttttttgcatacacacaaaatactgttgaattaataaagagaaaaatgtccACAGGTCTTGTATCTGCCAGCCCCGCTGTGGGTGCAAATGTTCACAGTAAAACAATACACAGtatattacatttcattctGCACAACTGCTGGGAAGAACGGGCCACTTCCATGAACACTGTTCttgtaaaaaatatttccatttgtCAATGAATTCCTCAACTTGAAattgaatttcagctttcagttacattgcaaaaaaaaaaaaaaagtacaaaaacatATTAACCAAGTGAAACTGAGCTTTTAGTCGGAACATTTAGCCTAACTTGCTACATCACTGACTCATCCGTGGAGAAATGAAGAAagggaaataaaattaaaaacacattgaCCTTCACTTTCATCTATAGTGTGTCCGTATGAAGCTTGTGTCTGGTTGTAGAGTATCTAAAActgaatgtaatattttaaccATGATTTGCAGTTGAATTTTCAGCTGTatagtcaataataataataataatagtagtacaatattataaaatatactgtatgtataatattataaaattatattagaaAAGAGTTTGTGCCATTCCAACTTCCAATTTTATTGGTAATTACACCCATAAGCATTAGggcattttgtgtaaatgtgtgtgtgtgcttttgtttcaACACAGCTGAAGCTGGTCCATCACTTGAGCTCAAACTGcagcatattttaatattgtatgaCAGTTGTATGACTTTAATGAGTACGCGCCAGTGCGACGTTTGAAACTTTCCATAATAGTGTCTTTTcagaatattttcttttataaaatatatttatgtttggaTCATTTTTAAGACACAAAAAGTGCATCTGAGGATGTGACGGTTAGTATTGCAgttctgtataaaaataaaactcaggaGTCAGATTTTCCTAGGCCAACCATGGTTTTCAAGAATCTCTTGTGTGAGGATATGCATCTCCTGTATCCTGTTCCTAAACAAAGGAATGTCTCATAAATATCTtccatataaatatatctatGCAAATATCCAAATGTCCAAATAAATACATCTGAGATGTGACATCTTCCAAGATAGCAAATGGGTCACGCGTCAATATTATTAGTCATATTACAAACAGCCATAAAGATGGAATCTTTCATATAGGGGCAAGCAGTGAGCGAAATGTAAACGTAACATATTTTTGCAAAGCAAAAACATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU228720 True 2220 lncRNA 0.35 2 9159433 9184089

Neighbor

gene id symbol gene type direction distance location
map2k4b map2k4,LOC108274195,LOC108424869,LOC107556463,LOC107719678,LOC108433489 coding upstream 3145 9142501 ~ 9156288 (+)
adprm adprm coding upstream 20033 9135203 ~ 9139400 (+)
trnal-aag_6 NA coding upstream 51500 9107852 ~ 9107933 (+)
trnaa-ugc_7 NA coding upstream 51676 9107686 ~ 9107757 (+)
LOC113527360 LOC108274022,LOC108424857,LOC105888776,LOC107653912 coding upstream 68887 9040824 ~ 9090546 (+)
trnad-guc_4 NA coding downstream 80685 9264774 ~ 9264845 (+)
trnad-guc_5 NA coding downstream 82174 9266263 ~ 9266334 (+)
trnar-ccu_4 NA coding downstream 325635 9509724 ~ 9509796 (+)
LOC113527682 LOC108273946 coding downstream 339267 9523356 ~ 9559377 (+)
plxdc1 LOC108274329,LOC108424883 coding downstream 422042 9606131 ~ 9627459 (+)
G193169 NA non-coding upstream 865 9158159 ~ 9158568 (+)
G193170 NA non-coding upstream 66186 9057399 ~ 9093247 (+)
G192858 NA non-coding upstream 241188 8918040 ~ 8918245 (+)
LOC117598667 NA non-coding upstream 557663 8596654 ~ 8601770 (+)
G192760 NA non-coding upstream 643499 8514382 ~ 8515934 (+)
G193386 NA non-coding downstream 195184 9379273 ~ 9380115 (+)
G193390 NA non-coding downstream 202054 9386143 ~ 9386394 (+)
G193458 NA non-coding downstream 331832 9515921 ~ 9516139 (+)
G193509 NA non-coding downstream 403076 9587165 ~ 9587819 (+)
G193542 NA non-coding downstream 468083 9652172 ~ 9653260 (+)
G192484 ank3 other upstream 1531322 7605981 ~ 7628111 (+)
tfam tfam other upstream 1723061 7428545 ~ 7436372 (+)
asah2 asah2,LOC107598643 other upstream 2323050 6822740 ~ 6836383 (+)
LOC113527389 NA other upstream 2431042 6725321 ~ 6728391 (+)
G191581 NA other upstream 3176196 5969743 ~ 5983237 (+)
LOC113527534 dnah9 other downstream 84404 9268493 ~ 9357961 (+)
G193383 LOC108273473 other downstream 184154 9368243 ~ 9369915 (+)
trnaq-cug_13 NA other downstream 328080 9512169 ~ 9512401 (+)
trnaq-cug_14 NA other downstream 328471 9512560 ~ 9512631 (+)
mrpl58 mrpl58 other downstream 328695 9512784 ~ 9515616 (+)

Expression


Co-expression Network