G193169



Basic Information


Item Value
gene id G193169
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 9158159 ~ 9158568 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>TU228721
ctgtggatggtaccatatAGAAACCATGAGgatgctgtggatggtaccatatAGAAACCACGaggatggctgtggatgttcttccttggatagccttaggagTGCAATTGTTAAGAACAGTTTGCACTTGAGTCTCCATtattgaacagttaataacttcaggcTGATACTTcagacttctgatcagaaggttgagggTTCATATTCCAGCACCACCAAgttgccactgctgggcccttgagcaaggtccttaaccctcaactgctcagttgtgtagATGCGATAACTGTAAAGTCggtctggataagggtgtctgccaaatgctgtaaatgtactcATAAGTTGCTCACAAGTTCCAGTAAATACAATAAGCACTTTTTGCCTATATGCACTCACCACACATTtgatta

Function


GO:

id name namespace
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
ko04744 Phototransduction

RNA


RNA id representative length rna type GC content exon number start site end site
TU228721 True 410 lncRNA 0.43 1 9158159 9158568

Neighbor


gene id symbol gene type direction distance location
map2k4b map2k4,LOC108274195,LOC108424869,LOC107556463,LOC107719678,LOC108433489 coding upstream 1871 9142501 ~ 9156288 (+)
adprm adprm coding upstream 18759 9135203 ~ 9139400 (+)
trnal-aag_6 NA coding upstream 50226 9107852 ~ 9107933 (+)
trnaa-ugc_7 NA coding upstream 50402 9107686 ~ 9107757 (+)
LOC113527360 LOC108274022,LOC108424857,LOC105888776,LOC107653912 coding upstream 67613 9040824 ~ 9090546 (+)
trnad-guc_4 NA coding downstream 106206 9264774 ~ 9264845 (+)
trnad-guc_5 NA coding downstream 107695 9266263 ~ 9266334 (+)
trnar-ccu_4 NA coding downstream 351156 9509724 ~ 9509796 (+)
LOC113527682 LOC108273946 coding downstream 364788 9523356 ~ 9559377 (+)
plxdc1 LOC108274329,LOC108424883 coding downstream 447563 9606131 ~ 9627459 (+)
G193170 NA non-coding upstream 64912 9057399 ~ 9093247 (+)
G192858 NA non-coding upstream 239914 8918040 ~ 8918245 (+)
LOC117598667 NA non-coding upstream 556389 8596654 ~ 8601770 (+)
G192760 NA non-coding upstream 642225 8514382 ~ 8515934 (+)
G192737 NA non-coding upstream 770042 8310878 ~ 8388117 (+)
G193168 NA non-coding downstream 865 9159433 ~ 9184089 (+)
G193386 NA non-coding downstream 220705 9379273 ~ 9380115 (+)
G193390 NA non-coding downstream 227575 9386143 ~ 9386394 (+)
G193458 NA non-coding downstream 357353 9515921 ~ 9516139 (+)
G193509 NA non-coding downstream 428597 9587165 ~ 9587819 (+)
G192484 ank3 other upstream 1530048 7605981 ~ 7628111 (+)
tfam tfam other upstream 1721787 7428545 ~ 7436372 (+)
asah2 asah2,LOC107598643 other upstream 2321776 6822740 ~ 6836383 (+)
LOC113527389 NA other upstream 2429768 6725321 ~ 6728391 (+)
G191581 NA other upstream 3174922 5969743 ~ 5983237 (+)
LOC113527534 dnah9 other downstream 109925 9268493 ~ 9357961 (+)
G193383 LOC108273473 other downstream 209675 9368243 ~ 9369915 (+)
trnaq-cug_13 NA other downstream 353601 9512169 ~ 9512401 (+)
trnaq-cug_14 NA other downstream 353992 9512560 ~ 9512631 (+)
mrpl58 mrpl58 other downstream 354216 9512784 ~ 9515616 (+)

Expression



Co-expression Network