G193316


Basic Information

Item Value
gene id G193316
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 9159434 ~ 9184089 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU228882
CATGTTTTTGCTTTGCAAAAATATGTTACGTTTACATTTCGCTCACTGCTTGCCCCTATATGAAAGATTCCATCTTTATGGCTGTTTGTAATATGACTAATAATATTGACGCGTGACCCATTTGCTATCTTGGAAGATGTCACATCTCAGATGTATTTATTTGGACATTTGGATATTTGCatagatatatttatatggaAGATATTTATGAGACATTCCTTTGTTTAGGAACAGGATACAGGAGATGCATATCCTCACACAAGAGATTCTTGAAAACCATGGTTGGCCTAGGAAAATCTGACtcctgagttttatttttatacagaacTGCAATACTAACCGTCACATCCTCAGATGCACTTTTTGTGTCTTAAAAATGAtccaaacataaatatattttataaaagaaaatattctgAAAAGACACTATTATGGAAAGTTTCAAACGTCGCACTGGCGCGTACTCATTAAAGTCATACAACTGtcatacaatattaaaatatgctgCAGTTTGAGCTCAAGTGATGGACCAGCTTCAGCTGTGTtgaaacaaaagcacacacacacatttacacaaaatgccCTAATGCTTATGGGTGTAATTACCAATAAAATTGGAAGTTGGAATGGCACAAACTCTTttctaatataattttataatattatacatacagtatattttataatattgtactactattattattattattattgactatACAGCTGAAAATTCAACTGCAAATCATggttaaaatattacattcagTTTTAGATACTCTACAACCAGACACAAGCTTCATACGGACACACTATAGATGAAAGTGAAGGtcaatgtgtttttaattttatttccctTTCTTCATTTCTCCACGGATGAGTCAGTGATGTAGCAAGTTAGGCTAAATGTTCCGACTAAAAGCTCAGTTTCACTTGGTTAATatgtttttgtactttttttttttttttgcaatgtaactgaaagctgaaattcaatTTCAAGTTGAGGAATTCATTGacaaatggaaatattttttacaaGAACAGTGTTCATGGAAGTGGCCCGTTCTTCCCAGCAGTTGTGCagaatgaaatgtaatataCTGTGTATTGTTTTACTGTGAACATTTGCACCCACAGCGGGGCTGGCAGATACAAGACCTGTggacatttttctctttattaattcaacagtattttgtgtgtatgcaaaaaaaaaaaataataatgcatctTTGTGTATTGTCGCCTGGGTGCCTGATTAGTGGGAGGAAAATCAAGTTCACTTTGACGATTTAAACTGTGAACAGAGCAGATTTGTGTGTGCTACAAGACATTTGAATGGATTTTGTCATATTTGGATTGGTGGAGGACTTAAGCGCCAGCAATGATCACCAAACATTCTCAATTTCCACACCAATGAACAATTTATGTTGTTAACACTGCACACTATCCTCAGATTTCCCCTCTTTTGACCATATAAACCATTTAAATATTGAATGTAAATGAACAGCACAGTGATAAGAGCATTCCCACTGTGGCCTTATGTTAGTGTATTTAACCTTCATTTAGGGCTTCACAGATCAAGTAGAAGattcaatttatttactttttatcagAGACAAAAAGCAACAGAACCGGTTCATCTTTGATTTCGTGGACTGTAATAGCTTTACTTTTGTACAAATCCTTCTACACAACAGGTTTACAGAGACTGAGCTTTGGAATAGGAGAATGTAACGAATCTGCATtggatttataatatatatgtcCATCCACTGCGGTATGGAGGACTGTATCACTAAGaaatgttttgggtttttttttacctccatTATGCCAGTGAAGAAACTTATAACAGACCAAGCACTCACTCAGCCATGTTCTCCTTTTTTACCTAATGGTCTGTAGTGCTGGATCAAAATTTTAATGACACATTGTGCATCAATTCCAGTCTTACCACACACTACTCCTAGCCAACcggatgagtgagagagagttcCATCATTCCATAACATCTGTCCAGTACACATGATTGCTCTGTCTTGCTGAAGAAAAcaaatttgtgttgtttttgtcttcatttttttttctcctggggaagaaatatatagatgtgaCAAAAAGCTTTTGTACTGCTTGGCCACTGAACAGCTTTACAATGTAAACCGTCTCAGTATGTCTCCACCACTGTACTATTAAAACTTcaataaacacca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU228882 True 2219 lncRNA 0.35 2 9159434 9184089

Neighbor

gene id symbol gene type direction distance location
LOC113527142 gas7,LOC107653998,LOC107719691 coding downstream 27108 9093141 ~ 9132326 (-)
trnal-aag_5 NA coding downstream 75624 9083729 ~ 9083810 (-)
trnal-aag_4 NA coding downstream 76494 9082859 ~ 9082940 (-)
trnal-uag_6 NA coding downstream 77428 9081925 ~ 9082006 (-)
trnal-uag_5 NA coding downstream 78177 9081176 ~ 9081257 (-)
foxk2 foxk2,LOC107719587 coding upstream 297461 9481550 ~ 9499180 (-)
wdr45b wdr45b,LOC107598578 coding upstream 316171 9500260 ~ 9509293 (-)
si:ch1073-357b18.4 LOC108273401 coding upstream 333120 9517209 ~ 9520812 (-)
LOC113527284 LOC108424836 coding upstream 410697 9594786 ~ 9596403 (-)
trnac-gca_15 NA coding upstream 444327 9628416 ~ 9628487 (-)
G193319 NA non-coding downstream 865 9158191 ~ 9158569 (-)
G193315 NA non-coding downstream 3147 9154442 ~ 9156287 (-)
G193138 LOC108273751 non-coding downstream 230786 8927981 ~ 8928648 (-)
G192945 NA non-coding downstream 618153 8464309 ~ 8541281 (-)
G193334 NA non-coding upstream 17903 9201992 ~ 9202672 (-)
G193355 dnah9 non-coding upstream 88328 9272417 ~ 9272654 (-)
G193356 NA non-coding upstream 89989 9274078 ~ 9274290 (-)
G193359 NA non-coding upstream 96564 9280653 ~ 9280952 (-)
G193360 dnah9 non-coding upstream 98604 9282693 ~ 9283127 (-)
si:dkey-94l16.4 LOC108273749 other downstream 301686 8847662 ~ 8857748 (-)
ank3b ank3,LOC107746453,LOC107654059 other downstream 1391922 7601218 ~ 7767512 (-)
ccdc6b ccdc6,ccdc6b,LOC107695538,LOC107654058,LOC107727062,LOC107746455 other downstream 1563553 7581350 ~ 7595881 (-)
ipmkb ipmk other downstream 1741056 7400000 ~ 7418378 (-)
itga3b itga3 other downstream 2565044 6546941 ~ 6594390 (-)
LOC113527700 shisa6,LOC108273473,LOC108424875,LOC107706559 other upstream 184128 9368217 ~ 9419487 (-)
trnam-cau_28 NA other upstream 331725 9515814 ~ 9515885 (-)
trnar-ucg_9 NA other upstream 331983 9516072 ~ 9516144 (-)
LOC113527759 LOC108273488 other upstream 403077 9587166 ~ 9590116 (-)
trnal-aag_7 NA other upstream 406286 9590375 ~ 9590456 (-)

Expression


Co-expression Network