trnaq-cug_13


Basic Information

Item Value
gene id trnaq-cug_13
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 9512169 ~ 9512401 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU229030
GGTTAGCACTCTGGACTCTGAATCCAGCGATCCGAGTTCAAATCTCGGTGGAACCTTCCTTTATTATAAAGCCGGTTTTTAACCATTATTAAATACGTAGGCTGCACGCAGTTGCGTCATTTATTACAAAGCAGGTTATTATtcaattcattattattcaattattattcaAAAAGCCCATTATTCAATACGTAGGTTGCACGCCGGTACGTCATCA
>trnaq-cug_13
GGTTCCATGGTGTAATGGTTAGCACTCTGGACTCTGAATCCAGCGATCCGAGTTCAAATCTCGGTGGAACCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU229030 True 217 lncRNA 0.38 1 9512185 9512401
trnaq-cug_13 False 72 tRNA 0.38 1 9512169 9512240

Neighbor

gene id symbol gene type direction distance location
trnar-ccu_4 NA coding upstream 2373 9509724 ~ 9509796 (+)
trnad-guc_5 NA coding upstream 245835 9266263 ~ 9266334 (+)
trnad-guc_4 NA coding upstream 247324 9264774 ~ 9264845 (+)
map2k4b map2k4,LOC108274195,LOC108424869,LOC107556463,LOC107719678,LOC108433489 coding upstream 355881 9142501 ~ 9156288 (+)
adprm adprm coding upstream 372769 9135203 ~ 9139400 (+)
LOC113527682 LOC108273946 coding downstream 10955 9523356 ~ 9559377 (+)
plxdc1 LOC108274329,LOC108424883 coding downstream 93730 9606131 ~ 9627459 (+)
LOC113527304 lasp1,LOC108274031,LOC108424884,LOC108258608,LOC108413872,LOC107689048 coding downstream 118264 9630665 ~ 9643176 (+)
LOC113527805 NA coding downstream 122476 9634877 ~ 9635067 (+)
plcd3b LOC108273813,LOC108424888 coding downstream 195282 9707683 ~ 9722874 (+)
G193390 NA non-coding upstream 125775 9386143 ~ 9386394 (+)
G193386 NA non-coding upstream 132054 9379273 ~ 9380115 (+)
G193168 NA non-coding upstream 328080 9159433 ~ 9184089 (+)
G193169 NA non-coding upstream 353601 9158159 ~ 9158568 (+)
G193170 NA non-coding upstream 418922 9057399 ~ 9093247 (+)
G193458 NA non-coding downstream 3520 9515921 ~ 9516139 (+)
G193509 NA non-coding downstream 74764 9587165 ~ 9587819 (+)
G193542 NA non-coding downstream 139771 9652172 ~ 9653260 (+)
G193544 NA non-coding downstream 182508 9694909 ~ 9780955 (+)
G193645 NA non-coding downstream 311646 9824047 ~ 9824468 (+)
G193383 LOC108273473 other upstream 142254 9368243 ~ 9369915 (+)
LOC113527534 dnah9 other upstream 154208 9268493 ~ 9357961 (+)
G192484 ank3 other upstream 1884058 7605981 ~ 7628111 (+)
tfam tfam other upstream 2075797 7428545 ~ 7436372 (+)
asah2 asah2,LOC107598643 other upstream 2675786 6822740 ~ 6836383 (+)
trnaq-cug_14 NA other downstream 159 9512560 ~ 9512631 (+)
mrpl58 mrpl58 other downstream 383 9512784 ~ 9515616 (+)
trnaq-cug_15 NA other downstream 1363 9513764 ~ 9513835 (+)
arhgap23b LOC108273815 other downstream 142886 9655287 ~ 9691595 (+)
msrb1b msrb1b,LOC100705913,LOC102780437 other downstream 1132425 10644826 ~ 10646547 (+)

Expression


Co-expression Network