mrpl58 (mrpl58)


Basic Information

Item Value
gene id mrpl58
gene name mrpl58
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 9512784 ~ 9515616 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU229031
GgctcccataacagcatgtttatGTTTCTCGCGATCTGCAAACAGGACTGTACTGTCACGACAAATATTATCTAGACTAAACTGCGATACATTTTTAATTCGCCATTTAGGCAGTGGCAAAAAGCTTCTGGCCAAGCACTCGGATAATTCACAGGGTGATCAGCCTGCTGACATCCCAGTCGATAAACTTAAAATAACTTACAGTCGGAGCAGCGGACCAGGAGGTCAACACGTAAACAAAGTCAATACAAAAGCAGAGGTTCGGTTTCATGTTCAGACAGCAGAATGGATTCCTGAGGAGGTGAGAAAGGAGATCCTCTTAAAGaataaaaCTCGGATAAATAAAGCTGGTGAGTTAATTGTAACTTCAGAGGTTAGCAGAAGCCAACAGAGGAACCTGGATGACTGTGTACAGAAAATCTCTGAGATCGTTAGTGAAGCCAGTCAGCAACCACCAGAGCCATCAGCGGAGGATCTCGCGCTGAGGGCTAAAAGgtTAGAGAAAAGAAATTTAGCAAGGCTCAAACAGAAAAAGATCCATTCTTCAACGAAGCAAGCACGACAGGTTAATTTTGACTGAATTGCAGctgtgaatatattttattttttgaatatattgtaaatattatacc
>XM_026914917.2
CGGAAGTAGTACCTACCTTCCTTCAAATCAATATGGCGgctcccataacagcatgtttatGTTTCTCGCGATCTGCAAACAGGACTGTACTGTCACGACAAATATTATCTAGACTAAACTGCGATACATTTTTAATTCGCCATTTAGGCAGTGGCAAAAAGCTTCTGGCCAAGCACTCGGATAATTCACAGGGTGATCAGCCTGCTGACATCCCAGTCGATAAACTTAAAATAACTTACAGTCGGAGCAGCGGACCAGGAGGTCAACACGTAAACAAAGTCAATACAAAAGCAGAGGTTCGGTTTCATGTTCAGACAGCAGAATGGATTCCTGAGGAGGTGAGAAAGGAGATCCTCTTAAAGaataaaaCTCGGATAAATAAAGCTGGTGAGTTAATTGTAACTTCAGAGGTTAGCAGAAGCCAACAGAGGAACCTGGATGACTGTGTACAGAAAATCTCTGAGATCGTTAGTGAAGCCAGTCAGCAACCACCAGAGCCATCAGCGGAGGATCTCGCGCTGAGGGCTAAAAGgtTAGAGAAAAGAAATTTAGCAAGGCTCAAACAGAAAAAGATCCATTCTTCAACGAAGCAAGCACGACAGGTTAATTTTGACTGAATTGCAGctgtgaatatattttattttttgaatatattgtaaatattatacctgtttttttttattgtgaatacTGTATGTCTTTTTGAATGAACTGATAGAAGAATATTCTCCTTTTCCTATACATATTTAAACCCCAAAGTGATAATATCTATGTATTATGTAACTGTTTGCGttatagtaaataaatttaattgttAAAACTA

Function

symbol description
mrpl58 Predicted to enable aminoacyl-tRNA hydrolase activity and translation release factor activity, codon nonspecific. Predicted to be involved in mitochondrial translational termination. Predicted to act upstream of or within translational termination. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPL58 (mitochondrial ribosomal protein L58).

NR:

description
peptidyl-tRNA hydrolase ICT1, mitochondrial

GO:

id name namespace
GO:0070126 mitochondrial translational termination biological_process
GO:0005762 mitochondrial large ribosomal subunit cellular_component
GO:0016150 translation release factor activity, codon nonspecific molecular_function
GO:0004045 aminoacyl-tRNA hydrolase activity molecular_function

KEGG:

id description
K15033 ICT1; peptidyl-tRNA hydrolase ICT1

RNA

RNA id representative length rna type GC content exon number start site end site
TU229031 False 632 lncRNA 0.41 6 9512821 9515462
XM_026914917.2 True 823 mRNA 0.38 6 9512784 9515616

Neighbor

gene id symbol gene type direction distance location
trnar-ccu_4 NA coding upstream 2988 9509724 ~ 9509796 (+)
trnad-guc_5 NA coding upstream 246450 9266263 ~ 9266334 (+)
trnad-guc_4 NA coding upstream 247939 9264774 ~ 9264845 (+)
map2k4b map2k4,LOC108274195,LOC108424869,LOC107556463,LOC107719678,LOC108433489 coding upstream 356496 9142501 ~ 9156288 (+)
adprm adprm coding upstream 373384 9135203 ~ 9139400 (+)
LOC113527682 LOC108273946 coding downstream 7740 9523356 ~ 9559377 (+)
plxdc1 LOC108274329,LOC108424883 coding downstream 90515 9606131 ~ 9627459 (+)
LOC113527304 lasp1,LOC108274031,LOC108424884,LOC108258608,LOC108413872,LOC107689048 coding downstream 115049 9630665 ~ 9643176 (+)
LOC113527805 NA coding downstream 119261 9634877 ~ 9635067 (+)
plcd3b LOC108273813,LOC108424888 coding downstream 192067 9707683 ~ 9722874 (+)
G193390 NA non-coding upstream 126390 9386143 ~ 9386394 (+)
G193386 NA non-coding upstream 132669 9379273 ~ 9380115 (+)
G193168 NA non-coding upstream 328695 9159433 ~ 9184089 (+)
G193169 NA non-coding upstream 354216 9158159 ~ 9158568 (+)
G193170 NA non-coding upstream 419537 9057399 ~ 9093247 (+)
G193458 NA non-coding downstream 305 9515921 ~ 9516139 (+)
G193509 NA non-coding downstream 71549 9587165 ~ 9587819 (+)
G193542 NA non-coding downstream 136556 9652172 ~ 9653260 (+)
G193544 NA non-coding downstream 179293 9694909 ~ 9780955 (+)
G193645 NA non-coding downstream 308431 9824047 ~ 9824468 (+)
trnaq-cug_14 NA other upstream 153 9512560 ~ 9512631 (+)
trnaq-cug_13 NA other upstream 383 9512169 ~ 9512401 (+)
G193383 LOC108273473 other upstream 142869 9368243 ~ 9369915 (+)
LOC113527534 dnah9 other upstream 154823 9268493 ~ 9357961 (+)
G192484 ank3 other upstream 1884673 7605981 ~ 7628111 (+)
arhgap23b LOC108273815 other downstream 139671 9655287 ~ 9691595 (+)
msrb1b msrb1b,LOC100705913,LOC102780437 other downstream 1129210 10644826 ~ 10646547 (+)
si:ch73-139e5.4 LOC108273417 other downstream 1717974 11233590 ~ 11248213 (+)
trnaq-cug_16 NA other downstream 1770581 11286197 ~ 11286268 (+)
tmem106a tmem106a other downstream 2098283 11613899 ~ 11621269 (+)

Expression


Co-expression Network