G193458


Basic Information

Item Value
gene id G193458
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 9515921 ~ 9516139 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU229034
GTTACAACTGTTTCCATTGCCTCTAATGTAGCCAATAGCGCAGTTTATAAATCTAGGTATGAAGTAGCCTTTTTATCCTTAGACATGTCGTGTTCTTTGTCAAATATGTAAGATGACGATTCTGGCGGTTTTTGGGTGGGAATGAAAAAGACGACCACGAAGGGACTCGAACCCTCAATCTTCTGATCCGAAGTCAGACGccttatccattaggccacg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU229034 True 219 lncRNA 0.43 1 9515921 9516139

Neighbor

gene id symbol gene type direction distance location
trnar-ccu_4 NA coding upstream 6125 9509724 ~ 9509796 (+)
trnad-guc_5 NA coding upstream 249587 9266263 ~ 9266334 (+)
trnad-guc_4 NA coding upstream 251076 9264774 ~ 9264845 (+)
map2k4b map2k4,LOC108274195,LOC108424869,LOC107556463,LOC107719678,LOC108433489 coding upstream 359633 9142501 ~ 9156288 (+)
adprm adprm coding upstream 376521 9135203 ~ 9139400 (+)
LOC113527682 LOC108273946 coding downstream 7217 9523356 ~ 9559377 (+)
plxdc1 LOC108274329,LOC108424883 coding downstream 89992 9606131 ~ 9627459 (+)
LOC113527304 lasp1,LOC108274031,LOC108424884,LOC108258608,LOC108413872,LOC107689048 coding downstream 114526 9630665 ~ 9643176 (+)
LOC113527805 NA coding downstream 118738 9634877 ~ 9635067 (+)
plcd3b LOC108273813,LOC108424888 coding downstream 191544 9707683 ~ 9722874 (+)
G193390 NA non-coding upstream 129527 9386143 ~ 9386394 (+)
G193386 NA non-coding upstream 135806 9379273 ~ 9380115 (+)
G193168 NA non-coding upstream 331832 9159433 ~ 9184089 (+)
G193169 NA non-coding upstream 357353 9158159 ~ 9158568 (+)
G193170 NA non-coding upstream 422674 9057399 ~ 9093247 (+)
G193509 NA non-coding downstream 71026 9587165 ~ 9587819 (+)
G193542 NA non-coding downstream 136033 9652172 ~ 9653260 (+)
G193544 NA non-coding downstream 178770 9694909 ~ 9780955 (+)
G193645 NA non-coding downstream 307908 9824047 ~ 9824468 (+)
G193646 LOC108273498,LOC107727700 non-coding downstream 309288 9825427 ~ 9826864 (+)
mrpl58 mrpl58 other upstream 305 9512784 ~ 9515616 (+)
trnaq-cug_15 NA other upstream 2086 9513764 ~ 9513835 (+)
trnaq-cug_14 NA other upstream 3290 9512560 ~ 9512631 (+)
trnaq-cug_13 NA other upstream 3520 9512169 ~ 9512401 (+)
G193383 LOC108273473 other upstream 146006 9368243 ~ 9369915 (+)
arhgap23b LOC108273815 other downstream 139148 9655287 ~ 9691595 (+)
msrb1b msrb1b,LOC100705913,LOC102780437 other downstream 1128687 10644826 ~ 10646547 (+)
si:ch73-139e5.4 LOC108273417 other downstream 1717451 11233590 ~ 11248213 (+)
trnaq-cug_16 NA other downstream 1770058 11286197 ~ 11286268 (+)
tmem106a tmem106a other downstream 2097760 11613899 ~ 11621269 (+)

Expression


Co-expression Network