LOC113527759 (LOC108273488)


Basic Information

Item Value
gene id LOC113527759
gene name LOC108273488
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 9587166 ~ 9590116 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU229104
aTCCATATTCATCGGTCTTGTCTTACCTGAGACAAAGGGGAAGACTATAGCTGAAATCACTGCAGAGTTTGAGAAATGTAACACGAAGGCCTTATCTAATTCAACACAGGACCACTTACAGCTACAGGAATCTCAACATATTATCCATCTGAATTCTGATGATTGATAGAGTTCATACAAAACTGATTATaccattattttacattattgtcCTTGCTGGCTTTGCAATATCACATGATATGAAATAAGAAATCTGTGTTATATCCCCTTTGTTGAATGTACAGTCATTTGTTTTGGGAAGACATTGGATTTTTCTAGAAgacaccatttttaatttttaaatcatttctgaGTCAGTTATTTACACCTGTGCATAATGAATTTGCTGCTTGATGGTAATCCCAGTGTCAGTGTCTGAATAAATCTAAATAGAGGACTTTAGGCATCTTAAAGTTTGCTAATTTCGCTGATGGCAGCTTGTGATAAAAACTGTGATTAAAAACTACTCAACAGTGTCTGCACAGAAACAAGAACCCATACCTCCAGTGACACAGACACTGGGTAGCCTGATTTTACTGACAATCAAATTATGTCAGATTTATTCTTTCTTCAAAATGCATGATTGTACCAAAAACAAACTATGCTGTCTCTGTATGTATGCGAGTTAATATTTTAGTAGGCCATGACTTATTTTTGACTGTGTATGCACTGATAAAAAACATTGTACAGGACAAGC
>XM_034309627.1
TTGGAACAGCCTTTTCATTATATGTCAGTATTAGACTTGTGCTTGTAAATGATCTCttatatatgtttatgattattaaaaatgaatagatcAATGAAGCATGATAAGGGTTGTTCTTTAACTCTTGCACTGACTGTGTGCTCTGCTGCTATTGGGGGAACTCTTCAGTATGGCTACAACTTGGCCATCGTCAATGCACCCACTACCTACATCCAGAAGTTTATTAATGAGACGTGTATGGAGAGGTGGGGCACAGCTCTGGAGTCCAATCAATTGGTCCTTATCTGGACCATCATAGTTTCTGCCTTTTCCCTTGGGGGACTGTTTGGGTCGCTGCTTGCTGGCCCAATGGCAATCCGATTTGGTCGCAGGCAAACCCTGTTGCTGAATAACTCATTCCTTTTGGTTAGTACACTCATGGTCCTGAGCAGTCGCTCAGCCAGATCGTTTGAGATGATCATCATTGCTCGTTTGCTTGTAGGAGTTAATGCGGGCGTGAGCATGAATGTCCAGCCTATGTATTTTGGGGAGAGTGCTCCTAAGGCCATGAGGGGTGCTGTCGCCTTTTCCTCTGCTGTTTTCACAGCCATGGGAATCCTGCTGGGACAGGTGACAGGTTTGACTGAACTGTTGGGGAGTGAGGCTCTCTGGCCGTATCTTCTAGCCAGCAATGCTGTTCCTGGCCTGCTCCAGCTGCTCACTCTGCCCTGGTTCCCGGAGAGCCCTCGCTACCTGCTCATCGACAGAGGCGATAGAGAGGCCTGCAGTCGTGCTCTTACCCGCCTGAGGGGCTGTAATGTGTCTGATGCTGAGATGGAGGAAATCCTGGAGGAGCAGAAAGCAGTCGGTGAGGCTCGAGCCAAATCACTGTGGGAACTACTGTCTGATAGTAGTCTTCGGCGTCAGCTGTGCATCGTCATGGTAGCCAGCAGTTCCATGATGCTCTGTGGGAACGACTCCATCTACTTCTATGCCTCATACATATTTCAGGAGGCAGGAATACCCATGGATAAGATCCAATATGTTACCATTGGCACAGGTGCTTGTGAATTCACTGCAGCTCTAATTTGTAACTTACTGATTGAAAGACTGGGTCGCCGCTTGCTCATTGTTGTTGGGTATGTGCTCATGGCTGGCTGGGCAGCGGTGTTCACTCTGGCTCTGTCTCTGCAGGGTAAAGTGACTGGCATGCCGTACCTGGGCATGGTATGTGTCTTTGCTTACATCCTGAGCTTTGGCATGGGTCCTGCAGGGGTAACCGGGATACTGCCCACCGAGCTCTTCAACCAGATGGCTCGACCTGCAGCTTACATGATGGCCGGCTCCATGATGTGGCTCAACCTCTTCCTGATGGGAATGGTCTTTCCTTTCATAGTCAACAGTATGGGCCAGTTTTGTTTCATTCctttctgtgctgtgtgtgtggtctcaTCCATATTCATCGGTCTTGTCTTACCTGAGACAAAGGGGAAGACTATAGCTGAAATCACTGCAGAGTTTGAGAAATGTAACACGAAGGCCTTATCTAATTCAACACAGGACCACTTACAGCTACAGGAATCTCAACATATTATCCATCTGAATTCTGATGATTGATAGAGTTCATACAAAACTGATTATaccattattttacattattgtcCTTGCTGGCTTTGCAATATCACATGATATGAAATAAGAAATCTGTGTTATATCCCCTTTGTTGAATGTACAGTCATTTGTTTTGGGAAGACATTGGATTTTTCTAGAAgacaccatttttaatttttaaatcatttctgaGTCAGTTATTTACACCTGTGCATAATGAATTTGCTGCTTGATGGTAATCCCAGTGTCAGTGTCTGAATAAATCTAAATAGAGGACTTTAGGCATCTTAAAGTTTGCTAATTTCGCTGATGGCAGCTTGTGATAAAAACTGTGATTAAAAACTACTCAACAGTGTCTGCACAGAAACAAGAACCCATACCTCCAGTGACACAGACACTGGGTAGCCTGATTTTACTGACAATCAAATTATGTCAGATTTATTCTTTCTTCAAAATGCATGATTGTACCAAAAACAAACTATGCTGTCTCTGTATGTATGCGAGTTAATATTTTAGTAGGCCATGACTTATTTTTGACTGTGTATGCACTGATAAAAAACATTGTACAGGACAAGCTATTTATGACCTaatttaagttttaaaatgtaaaagttatatttttgttGCAGTGTAAAGGGACTGAACgatatgtaatatgttattTCAAACTCTGAGATTCTCTTCCAATATTCAAATGCTACTACATTATTAATCATGGTGATCTATACATAAATTATAGTGCCTCCTTTATTAGAAatgatatgaatatatatatataaaaaaaaagtcctggtATTTGATTGTACTTGAAATGAACTATGCTGATGAAAATACTAGGCATGATTGTAATGCCTTCAAACAAACTGCACTTCTAGTCCTCTGTACTACTCAGTAGTTCTAGCTAttatataaacactacagtgcatttttaatgcataacttatttatttccagagcaaactgtatttatttataactactGTTGAAGCCAACTTTTCTGAGAgagctttttttctgtttgtatgtTATGAAGACCAAGGCAATCATTTTAAACTGCATGTTGACAAACTTAGAACTGCATTACTTGTGCTATATTACCCTCCAATAGGTGGCACTGTATACCAAAGACACTCTAAGCTGTGCTCATGCACTGGGTTGACACTTTATCACTGCATACTGATTCTTGTCTCATGTGAACAAGGTCACTCTCAGCATGCCAGTTCATGGACAACAGATGACATGATAGCAGATGGAAAGAGTTCTGCTGTTCCTCCTGCGATTTTAAAACTGACCAACTGTTTCCATTCTACTCCCTGTATACAAAAATGTTATACTCATATCAAGCAGTGATGCAAATAAAG

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU229104 False 736 lncRNA 0.35 1 9587951 9588686
XM_034309627.1 True 2951 mRNA 0.42 1 9587166 9590116

Neighbor

gene id symbol gene type direction distance location
si:ch1073-357b18.4 LOC108273401 coding downstream 66354 9517209 ~ 9520812 (-)
wdr45b wdr45b,LOC107598578 coding downstream 77873 9500260 ~ 9509293 (-)
foxk2 foxk2,LOC107719587 coding downstream 87986 9481550 ~ 9499180 (-)
myocd myocd coding downstream 336051 9162224 ~ 9251115 (-)
LOC113527142 gas7,LOC107653998,LOC107719691 coding downstream 454840 9093141 ~ 9132326 (-)
LOC113527284 LOC108424836 coding upstream 4670 9594786 ~ 9596403 (-)
trnac-gca_15 NA coding upstream 38300 9628416 ~ 9628487 (-)
LOC113527303 LOC108274029,LOC108424886 coding upstream 52924 9643040 ~ 9653007 (-)
hexim1 LOC108273817 coding upstream 101664 9691780 ~ 9695274 (-)
acbd4 acbd4,LOC107662569 coding upstream 105850 9695966 ~ 9705363 (-)
G193476 NA non-coding downstream 50554 9535459 ~ 9536612 (-)
G193474 NA non-coding downstream 53142 9533729 ~ 9534024 (-)
G193453 NA non-coding downstream 77227 9509733 ~ 9509939 (-)
G193447 NA non-coding downstream 111182 9475084 ~ 9475984 (-)
G193433 NA non-coding downstream 178493 9408413 ~ 9408673 (-)
G193567 NA non-coding upstream 40566 9630682 ~ 9668932 (-)
G193731 NA non-coding upstream 233956 9824072 ~ 9825207 (-)
LOC117598498 NA non-coding upstream 553971 10144087 ~ 10169389 (-)
G193940 pms2 non-coding upstream 696677 10286793 ~ 10288097 (-)
G193971 NA non-coding upstream 758983 10349099 ~ 10349540 (-)
trnar-ucg_9 NA other downstream 71022 9516072 ~ 9516144 (-)
trnam-cau_28 NA other downstream 71281 9515814 ~ 9515885 (-)
LOC113527700 shisa6,LOC108273473,LOC108424875,LOC107706559 other downstream 167679 9368217 ~ 9419487 (-)
si:dkey-94l16.4 LOC108273749 other downstream 729418 8847662 ~ 8857748 (-)
ank3b ank3,LOC107746453,LOC107654059 other downstream 1819654 7601218 ~ 7767512 (-)
trnal-aag_7 NA other upstream 259 9590375 ~ 9590456 (-)
LOC113527760 LOC108273447,LOC108424882,LOC103023950,LOC100693129,LOC101473140,LOC103373902 other upstream 445 9590561 ~ 9592549 (-)
pcgf5b pcgf5,LOC108410714,LOC107584148,LOC107753439,LOC107669177,LOC107594155 other upstream 379626 9969742 ~ 9990264 (-)
tom1l2 tom1l2,LOC108274196,LOC108432008,LOC107734205,LOC107731411,LOC107699872,LOC107594179 other upstream 982819 10572935 ~ 10586125 (-)
l3mbtl2 l3mbtl2 other upstream 1688051 11278167 ~ 11285972 (-)

Expression


Co-expression Network