G193645


Basic Information

Item Value
gene id G193645
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 9824047 ~ 9824468 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU229297
CCCTGCATTCTGTATTGTaaatgggtgacaaattaaaggaaaaaccaaatTAAAGTGTATTAGTAAGGTGTTAGGCCACCAAGAGCTGCTTTGGTGCATACTGGTGAAAAATTCTACAAGTCTCCAAAACTGTATtagagggatgaacaccattcttccaaaagatattccttcaattcatattttgatgatggtggtaaaGTATGCTGTCTAACACAATGGTCCAAAATCTCTCATGTGTCTTCAGTTGAGTTGAGATGTGACAGAGAAGGCCAAAGCATATAATTTAATCATCTCCATCCTCAGCGAGTCCTGATGCTGTGTGGATGGAACACTGTCATCcgggaagagaccactcccatcaggacagaaatgtttcattacaggataaaggtgatcagtcaaaAGCACCGTGTATTGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU229297 True 422 lncRNA 0.40 1 9824047 9824468

Neighbor

gene id symbol gene type direction distance location
svild si:dkeyp-94b4.1,LOC108273812,LOC107758427 coding upstream 37663 9732360 ~ 9786384 (+)
nmt1b LOC108273814,LOC108424889 coding upstream 95066 9724009 ~ 9728981 (+)
plcd3b LOC108273813,LOC108424888 coding upstream 101173 9707683 ~ 9722874 (+)
LOC113527304 lasp1,LOC108274031,LOC108424884,LOC108258608,LOC108413872,LOC107689048 coding upstream 180871 9630665 ~ 9643176 (+)
LOC113527805 NA coding upstream 188980 9634877 ~ 9635067 (+)
znf281b znf281 coding downstream 16915 9841383 ~ 9848378 (+)
muc13b NA coding downstream 31266 9855734 ~ 9869864 (+)
mpp3b LOC108273448,LOC108424894,LOC107669230,LOC107594152 coding downstream 60167 9884635 ~ 9903223 (+)
ppp1r3cb ppp1r3c coding downstream 84720 9909188 ~ 9915137 (+)
ankrd1b ankrd1 coding downstream 171032 9995500 ~ 10009123 (+)
G193544 NA non-coding upstream 43092 9694909 ~ 9780955 (+)
G193542 NA non-coding upstream 170787 9652172 ~ 9653260 (+)
G193509 NA non-coding upstream 236228 9587165 ~ 9587819 (+)
G193458 NA non-coding upstream 307908 9515921 ~ 9516139 (+)
G193390 NA non-coding upstream 437653 9386143 ~ 9386394 (+)
G193646 LOC108273498,LOC107727700 non-coding downstream 959 9825427 ~ 9826864 (+)
LOC117598497 NA non-coding downstream 319885 10144353 ~ 10148786 (+)
G193842 minpp1 non-coding downstream 400234 10224702 ~ 10226319 (+)
G193828 pvalb2,prv2,LOC108432016,LOC107669167,LOC107753417 non-coding downstream 500488 10324956 ~ 10336247 (+)
G193972 NA non-coding downstream 525731 10350199 ~ 10350620 (+)
arhgap23b LOC108273815 other upstream 132452 9655287 ~ 9691595 (+)
mrpl58 mrpl58 other upstream 308431 9512784 ~ 9515616 (+)
trnaq-cug_15 NA other upstream 310212 9513764 ~ 9513835 (+)
trnaq-cug_14 NA other upstream 311416 9512560 ~ 9512631 (+)
trnaq-cug_13 NA other upstream 311646 9512169 ~ 9512401 (+)
msrb1b msrb1b,LOC100705913,LOC102780437 other downstream 820358 10644826 ~ 10646547 (+)
si:ch73-139e5.4 LOC108273417 other downstream 1409122 11233590 ~ 11248213 (+)
trnaq-cug_16 NA other downstream 1461729 11286197 ~ 11286268 (+)
tmem106a tmem106a other downstream 1789431 11613899 ~ 11621269 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other downstream 2238340 12062808 ~ 12085359 (+)

Expression


Co-expression Network