G193731


Basic Information

Item Value
gene id G193731
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 9824072 ~ 9825207 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU229413
TAGTATTGCATGTGTATTTCTTAGCAAAGGCAattagttaagaaaaaaaaaagagtgagctGACTAGTCATCACACTTTTCAAGCTATAGCCATATTTAAAACTCCCAGTTGTGTTTTTGTCCAAGCTGAGATGTTAGCAAGTGCAACAAAAGTCACACGCACAGCTTGCCCGAAGAGACGTATAATGGCTCTGGGCTGAATGCAATGCCTGCTGaggttttgtttaaaatgctgCCAGCAAAACAGGTGCCAGTAAGTATGTAGTTATTTACTGAAATAGAGTACAGTGATAATATTGTAAACTATGATAAAAGCTTAAGCAATTAATATGATATGAAAATTTCATATCTGCACATATCTATTTCtgataaatttatattttcattaagctggttagaaatgatttatttaggTGCATTGATGCATTATTGGTATATAAAGGTTTTACAGTGTGAAAggttattgttacatttaactGTCTTTCAGTAAGAGGTTACTTAAACTACCAATTAACTGTTCTCCTGAGATAAACAGACATTTGTCTGAATATGTGAATTACACCCAGTAGACCCCATAAGGTATACATAGTGACTTTAAAATGCTTCTCCTGTCATTACTATATaaagatgggtgacaaattaaaggaaaactccatgGCTCTGTTATTCTGTGGGAGTAAATTATTTTGCTgccatggtttgggtccacttgtctcCTTAGAAGGAACGATCACTACAAATCAATACACGGTGCTtttgactgatcacctttatcctgtaatgaaacatttctgtcctgatgggagtggtctcttcccgGATGACAGTGTTCCATCCACACAGCATCAGGACTCGCTGAGGATGGAGATGATTAAATTATATGCTTTGGCCTTCTCTGTCACATCTCAACTCAACTGAAGACACATGAGAGATTTTGGACCATTGTGTTAGACAGCATACtttaccaccatcatcaaaatatgaattgaaggaatatcttttggaagaatggtgttcatccctctaATACAGTTTTGGAGACTTGTAGAATTTTTCACCAGTATGCACCAAAGCAGCTCTTGGTGGCCTAACACCTTACTAATACACTTTAatttggtttttcctttaatttgtca

Function

GO: NA

KEGG:

id description
ko04020 Calcium signaling pathway
ko04724 Glutamatergic synapse

RNA

RNA id representative length rna type GC content exon number start site end site
TU229413 True 1136 lncRNA 0.36 1 9824072 9825207

Neighbor

gene id symbol gene type direction distance location
acbd4 acbd4,LOC107662569 coding downstream 118709 9695966 ~ 9705363 (-)
hexim1 LOC108273817 coding downstream 128798 9691780 ~ 9695274 (-)
LOC113527303 LOC108274029,LOC108424886 coding downstream 171065 9643040 ~ 9653007 (-)
trnac-gca_15 NA coding downstream 195585 9628416 ~ 9628487 (-)
LOC113527284 LOC108424836 coding downstream 227669 9594786 ~ 9596403 (-)
kcnj19b si:dkey-100n10.2,LOC108273498,LOC108424892,LOC107758432,LOC107584158,LOC107661094,LOC107727700,LOC107592353 coding upstream 231 9825438 ~ 9838465 (-)
hectd2 hectd2,LOC107584154,LOC107758436,LOC107594154,LOC107753452 coding upstream 103115 9928322 ~ 9949802 (-)
rpp30 rpp30 coding upstream 184437 10009644 ~ 10014434 (-)
LOC113527283 htr7 coding upstream 210368 10035575 ~ 10038093 (-)
LOC113527459 LOC108274285 coding upstream 237056 10062263 ~ 10064146 (-)
G193567 NA non-coding downstream 155140 9630682 ~ 9668932 (-)
G193476 NA non-coding downstream 287460 9535459 ~ 9536612 (-)
G193474 NA non-coding downstream 290048 9533729 ~ 9534024 (-)
G193453 NA non-coding downstream 314133 9509733 ~ 9509939 (-)
G193447 NA non-coding downstream 348088 9475084 ~ 9475984 (-)
LOC117598498 NA non-coding upstream 318880 10144087 ~ 10169389 (-)
G193940 pms2 non-coding upstream 461586 10286793 ~ 10288097 (-)
G193971 NA non-coding upstream 523892 10349099 ~ 10349540 (-)
G194041 NA non-coding upstream 663560 10488767 ~ 10489028 (-)
G194042 NA non-coding upstream 664778 10489985 ~ 10490212 (-)
LOC113527760 LOC108273447,LOC108424882,LOC103023950,LOC100693129,LOC101473140,LOC103373902 other downstream 231523 9590561 ~ 9592549 (-)
trnal-aag_7 NA other downstream 233616 9590375 ~ 9590456 (-)
LOC113527759 LOC108273488 other downstream 233956 9587166 ~ 9590116 (-)
trnar-ucg_9 NA other downstream 307928 9516072 ~ 9516144 (-)
trnam-cau_28 NA other downstream 308187 9515814 ~ 9515885 (-)
pcgf5b pcgf5,LOC108410714,LOC107584148,LOC107753439,LOC107669177,LOC107594155 other upstream 144535 9969742 ~ 9990264 (-)
tom1l2 tom1l2,LOC108274196,LOC108432008,LOC107734205,LOC107731411,LOC107699872,LOC107594179 other upstream 747728 10572935 ~ 10586125 (-)
l3mbtl2 l3mbtl2 other upstream 1452960 11278167 ~ 11285972 (-)
G195173 prr15l other upstream 2558218 12383425 ~ 12387460 (-)
cd37 NA other upstream 2648868 12474075 ~ 12480176 (-)

Expression


Co-expression Network