msrb1b (msrb1b,LOC100705913,LOC102780437)


Basic Information

Item Value
gene id msrb1b
gene name msrb1b,LOC100705913,LOC102780437
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 10644826 ~ 10646547 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU229853
TGCGCGCTGGAGTGGCACTGTGGTGTTGATGTTGTGctgttaaaatttttaaattcaatGCAGCTATTTAAATTCGAGtgttattaattatacagtGAGCTGTACCATCTGTATCTTTAACGACAAAATGTCGTTTTGTTCTTTTTCCGGGAAGGAAGTGTACAAAGACCATTTTAAACGAGGAATATATGTTTGCTCGCAGTGTGCAAACCCACTATTTTCAAGTAGATCCAAATATGCCCATTCCTCGCCTTGGCCAGCCTTCACAGAAACCATCCATGAGGACAGTGTAACTAAAGTGATGGAGACACTCACAGCTTATAAGGTTCTGTGTGGCAAGTGTGGCAATGGACTAGGCCATGAGTTTCTGAATGACGGTCCAGAGGAAGGCATGTCAAGATTTTGAATTTTTAGCCATTCGCTGAAGTTTGTCCCAAAAGACAAGGCTGACAAGCACTAAAGCGAGGATGGAGGTCTGTGAACGTGCTCTGTAGCTGCTGTTGCACGCACATTAAGGGGATGCTCAGTTCATGAAGTGGACAGGGAAAAATCCGCTTGGGCCCCTGTTCACAGATGTATGTGGTCGTCCTGCTCTTTACCTCATTGCAAAACAGTTGtaataatatttcaaatatgCACAATAtcatagaaacaaaaacagatgcTTCCTCATAGgtcataataattaatattctcCACTAAATCCatattatatgagttactatggCTCCTCTGGCGCTATGGTTCTCAAACTGGGATGTGTGATGTATagatgtaatttattattacttttttaaaagagATCAACTGTTAATGTTgtagttattattttacatCTGCATATAATTAACTCGTCATTTGAGTTAACaacatgtataaatatttcaattttattaaaactagGAAAAATATGTTAGACATTTCAGTTCCAACACTGCATCTGGTTTTGGGTGGAATGTTCAGGAACATTCAGGCTtc
>XM_034309091.1
agatttctCACTGATCATGGGCAAATGGAAATACAGTGCCATCTACTGGACATCTAATTACACCCGGTTGAGTTTTGTAATTATCACGTGGCCGGAATATTTGAACAGCGCATGCGCGCTGGAGTGGCACTGTGGTGTTGATGTTGTGctgttaaaatttttaaattcaatGCAGCTATTTAAATTCGAGtgttattaattatacagtGAGCTGTACCATCTGTATCTTTAACGACAAAATGTCGTTTTGTTCTTTTTCCGGGAAGGAAGTGTACAAAGACCATTTTAAACGAGGAATATATGTTTGCTCGCAGTGTGCAAACCCACTATTTTCAAGTAGATCCAAATATGCCCATTCCTCGCCTTGGCCAGCCTTCACAGAAACCATCCATGAGGACAGTGTAACTAAAGTGATGGAGACACTCACAGCTTATAAGGTTCTGTGTGGCAAGTGTGGCAATGGACTAGGCCATGAGTTTCTGAATGACGGTCCAGAGGAAGGCATGTCAAGATTTTGAATTTTTAGCCATTCGCTGAAGTTTGTCCCAAAAGACAAGGCTGACAAGCACTAAAGCGAGGATGGAGGTCTGTGAACGTGCTCTGTAGCTGCTGTTGCACGCACATTAAGGGGATGCTCAGTTCATGAAGTGGACAGGGAAAAATCCGCTTGGGCCCCTGTTCACAGATGTATGTGGTCGTCCTGCTCTTTACCTCATTGCAAAACAGTTGtaataatatttcaaatatgCACAATAtcatagaaacaaaaacagatgcTTCCTCATAGgtcataataattaatattctcCACTAAATCCatattatatgagttactatggCTCCTCTGGCGCTATGGTTCTCAAACTGGGATGTGTGATGTATagatgtaatttattattacttttttaaaagagATCAACTGTTAATGTTgtagttattattttacatCTGCATATAATTAACTCGTCATTTGAGTTAACaacatgtataaatatttcaattttattaaaactagGAAAAATATGTTAGACATTTCAGTTCCAACACTGCATCTGGTTTTGGGTGGAATGTTCAGGAACATTCAGGCTtccataaatatgtataatggtACATTTTTGCTTAATGTAGTATACTAATATGTGAATAGTTCaactgtttgtaaaataaaaatgttctacAATTAA

Function

symbol description
msrb1b Predicted to enable L-methionine-(R)-S-oxide reductase activity and peptide-methionine (R)-S-oxide reductase activity. Orthologous to human MSRB1 (methionine sulfoxide reductase B1).

NR:

description
PREDICTED: methionine-R-sulfoxide reductase B1-A-like

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0006979 response to oxidative stress biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0030041 actin filament polymerization biological_process
GO:0030091 protein repair biological_process
GO:0015629 actin cytoskeleton cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0033743 peptide-methionine (R)-S-oxide reductase activity molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU229853 False 978 lncRNA 0.39 4 10644938 10646453
XM_034309091.1 True 1184 mRNA 0.38 4 10644826 10646547

Neighbor

gene id symbol gene type direction distance location
neurl2 neurl2,LOC107699858 coding upstream 242 10641964 ~ 10644584 (+)
rnf151 rnf151 coding upstream 23323 10620034 ~ 10621503 (+)
noxo1b NA coding upstream 28089 10611415 ~ 10616737 (+)
foxl3 LOC108273490,LOC108431962,LOC107731394,LOC107594215,LOC107584227,LOC107669190,LOC107734180 coding upstream 75137 10567499 ~ 10569689 (+)
fam20cb fam20cb,fam20c,LOC108274201,LOC105888715,LOC107699871,LOC107669229,LOC108432010,LOC107734234 coding upstream 80076 10532417 ~ 10564750 (+)
meiob meiob coding downstream 726 10647273 ~ 10651361 (+)
mlst8 mlst8 coding downstream 4741 10651288 ~ 10655032 (+)
grid2ipb grid2ip,LOC107584118,LOC108274076,LOC107669204,LOC107734213,LOC107731383 coding downstream 22633 10669180 ~ 10690023 (+)
LOC113527483 NA coding downstream 44001 10690548 ~ 10693499 (+)
lcmt1 lcmt1,LOC107734249,LOC107584116,LOC107731431,LOC107669194 coding downstream 67267 10713814 ~ 10720682 (+)
G193972 NA non-coding upstream 294206 10350199 ~ 10350620 (+)
G193828 pvalb2,prv2,LOC108432016,LOC107669167,LOC107753417 non-coding upstream 308579 10324956 ~ 10336247 (+)
G193842 minpp1 non-coding upstream 418507 10224702 ~ 10226319 (+)
LOC117598497 NA non-coding upstream 496040 10144353 ~ 10148786 (+)
G193646 LOC108273498,LOC107727700 non-coding upstream 817962 9825427 ~ 9826864 (+)
G194087 pgp,LOC108257462,LOC107734160,LOC107669208,LOC107584220,LOC107731387,LOC107594223 non-coding downstream 13331 10659878 ~ 10660950 (+)
G194113 NA non-coding downstream 64774 10711321 ~ 10712015 (+)
G194201 NA non-coding downstream 134116 10780663 ~ 10780884 (+)
LOC113527761 NA non-coding downstream 142220 10788767 ~ 10790017 (+)
G194276 NA non-coding downstream 318403 10964950 ~ 10965617 (+)
arhgap23b LOC108273815 other upstream 953231 9655287 ~ 9691595 (+)
mrpl58 mrpl58 other upstream 1129210 9512784 ~ 9515616 (+)
trnaq-cug_15 NA other upstream 1130991 9513764 ~ 9513835 (+)
trnaq-cug_14 NA other upstream 1132195 9512560 ~ 9512631 (+)
trnaq-cug_13 NA other upstream 1132425 9512169 ~ 9512401 (+)
si:ch73-139e5.4 LOC108273417 other downstream 587043 11233590 ~ 11248213 (+)
trnaq-cug_16 NA other downstream 639650 11286197 ~ 11286268 (+)
tmem106a tmem106a other downstream 967352 11613899 ~ 11621269 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other downstream 1416261 12062808 ~ 12085359 (+)
LOC113527673 LOC108273669,LOC108273679 other downstream 1826132 12472679 ~ 12473983 (+)

Expression


Co-expression Network