G194087 (pgp,LOC108257462,LOC107734160,LOC107669208,LOC107584220,LOC107731387,LOC107594223)


Basic Information

Item Value
gene id G194087
gene name pgp,LOC108257462,LOC107734160,LOC107669208,LOC107584220,LOC107731387,LOC107594223
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 10659878 ~ 10660950 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU229857
GGACTGCTTTGCCCCCCTCGAGAGGAAGCCTGGTGTCTGTGTTGGTGCCCACAAACTGACACTCAGCATTACACAGGTACTGTAACGCCCTGTTCAGCTTCATGTAACTGAAATGTTCGTCAAAACCCACCAGCACGGCCTTGACCTCCGGGTCCAGAGGAACACTGGCCCAGTCTTTCTGGCCTCCTGAGACTGGATCGGGTCCCACACCGACCGGCTCGATCCCCATCGCCTCGAGCTCTTGCCTCATGGCATTGCTTCCAATCAAGTACACTTTGCCCTCGAGGTTGCACACGGTTTTAAGGAACACGGCCGAACAGTACGCTGTGCCGAACACCTCGCCCTCGCTGGCCTCGAAGCCCAGCTTGCTCAGCTTCTCCGCATACATTTTGCGCGtttttgtgctgttattggtgACGAAAAACACGCGCTTTCCAGCCTTTTTCAGCGAGTTGACCACTTCAGGGGCGCCGGGAATGGCCTGATCTCCGCGCCATATCACCCCGTCGCAGTCAAACAGCACAGTGTCCACTGAGTCCAGCACCTGCTTGGTCAGCGGGCCAGTGAGTCGGGTGCACTTCGACACAGCCATGGAGAAATCAGCTGCTGTCACTGTTAGCTCGCCGGTTATTCACTTCCTGCTGAACACACTGCTGAACCCTTCTCCGCTTGGTTAATTATCGTTAAGACTGTAACTGTCGACAGTCGCGAGCAAATACTAACTGACAACGATTTGTTTAAAACTGTTGCTGCAACACGAGGTATCTGATGTTGAGTAATGCATTCGCTTGTCTAAGGCACCCCGACATGACCTTATTGCATTAGCCGCCCATACAACACTTCCGCACCGGCTTAAAGGGACAGCAACGTAAAAAAACTGGTGTACACTGGGCTGCTGTGACTGAAAAACTAGTGTATAGCAGGCTAATGTGACTGAAAACTGGTGTATATCAGGCTAATGTGACTGAAACTGGTGTACACCAGGCTAATGTGACTGAAAAACTAGTGTA

Function

symbol description
pgp Predicted to enable glycerol-3-phosphatase activity. Predicted to be active in cytoplasm. Is expressed in adaxial cell; otic placode; and somite. Orthologous to human PGP (phosphoglycolate phosphatase).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU229857 True 1010 lncRNA 0.52 2 10659878 10660950

Neighbor

gene id symbol gene type direction distance location
mlst8 mlst8 coding upstream 4846 10651288 ~ 10655032 (+)
meiob meiob coding upstream 8517 10647273 ~ 10651361 (+)
neurl2 neurl2,LOC107699858 coding upstream 15294 10641964 ~ 10644584 (+)
rnf151 rnf151 coding upstream 38375 10620034 ~ 10621503 (+)
noxo1b NA coding upstream 43141 10611415 ~ 10616737 (+)
grid2ipb grid2ip,LOC107584118,LOC108274076,LOC107669204,LOC107734213,LOC107731383 coding downstream 8230 10669180 ~ 10690023 (+)
LOC113527483 NA coding downstream 29598 10690548 ~ 10693499 (+)
lcmt1 lcmt1,LOC107734249,LOC107584116,LOC107731431,LOC107669194 coding downstream 52864 10713814 ~ 10720682 (+)
aqp8a.1 LOC108274292 coding downstream 61490 10722440 ~ 10724659 (+)
aqp8a.2 aqp8,LOC107692107,LOC107734187,LOC107594226 coding downstream 65743 10726693 ~ 10728551 (+)
G193972 NA non-coding upstream 309258 10350199 ~ 10350620 (+)
G193828 pvalb2,prv2,LOC108432016,LOC107669167,LOC107753417 non-coding upstream 323631 10324956 ~ 10336247 (+)
G193842 minpp1 non-coding upstream 433559 10224702 ~ 10226319 (+)
LOC117598497 NA non-coding upstream 511092 10144353 ~ 10148786 (+)
G193646 LOC108273498,LOC107727700 non-coding upstream 833014 9825427 ~ 9826864 (+)
G194113 NA non-coding downstream 50371 10711321 ~ 10712015 (+)
G194201 NA non-coding downstream 119713 10780663 ~ 10780884 (+)
LOC113527761 NA non-coding downstream 127817 10788767 ~ 10790017 (+)
G194276 NA non-coding downstream 304000 10964950 ~ 10965617 (+)
G194278 NA non-coding downstream 304688 10965638 ~ 10968033 (+)
msrb1b msrb1b,LOC100705913,LOC102780437 other upstream 13331 10644826 ~ 10646547 (+)
arhgap23b LOC108273815 other upstream 968283 9655287 ~ 9691595 (+)
mrpl58 mrpl58 other upstream 1144262 9512784 ~ 9515616 (+)
trnaq-cug_15 NA other upstream 1146043 9513764 ~ 9513835 (+)
trnaq-cug_14 NA other upstream 1147247 9512560 ~ 9512631 (+)
si:ch73-139e5.4 LOC108273417 other downstream 572640 11233590 ~ 11248213 (+)
trnaq-cug_16 NA other downstream 625247 11286197 ~ 11286268 (+)
tmem106a tmem106a other downstream 952949 11613899 ~ 11621269 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other downstream 1401858 12062808 ~ 12085359 (+)
LOC113527673 LOC108273669,LOC108273679 other downstream 1811729 12472679 ~ 12473983 (+)

Expression


Co-expression Network