G194091 (zdhhc4,LOC108274079)


Basic Information

Item Value
gene id G194091
gene name zdhhc4,LOC108274079
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 10594229 ~ 10662463 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU229865
aaacatttttctCATTTTTAGACACCACATGTATGTAAAccttttcataaaataataggtctgaattaaaacaattaaatatcaAACTATTTTATCTAAATCACTTCTAACATATGACTCTGTGACTTCTACACAACTCTGATATTTCCACAGAGTCACACGAAACTATAAAATAAAGGGGAAGGTGATTCTGGATTCATGATGGCTGCTGCTACTGTTTTCAGCTCTGTGATGTCcttttgtgcattttataaattaagAAGTGTCATACAAATTCAGAAACCACATAAGCAAGTGTTTTTGAGATTACTTAATgcagtgcaaatgtgcaacgaTTTAGGTATGtagtttgcacaatgctaaactggtggctataagcttccCTTACTTGTCAGCAACATGAGCCAACACTGCAGCTCTGTATCACTACATCTGGGCTCAGgagaaaattgtgtaaatttcttTTTTGACCAAACTCCTTTAACCAAAAGCTAATCGTGTTTCTTCTGAGTAGGGCATAAAGGCCAAACTATTTCTGCAAGATTTTTGAGGATTCCTCTGTGATAAAAACCACGTAATGGGTTGTACGAAGTATGGCATCGATGTCCAGAGACAGGATTGCAGTACTGGCAGCCATGGCCTTTCTGCTTGAACCATTCATTAGATGTCTGATTCACCAGAGCCAGgtaacagtgaaacatggtaTACCCTGCTACaaggaaaaatacaaatacCACGAAGCCAAGCATGAAGACTATCCTGGGGAAGGTCATGAAGAGGTGCTGTGGAGAGAGGTTTGCATCATTT

Function

symbol description
zdhhc4 Predicted to enable protein-cysteine S-palmitoyltransferase activity. Predicted to be involved in peptidyl-L-cysteine S-palmitoylation and protein targeting to membrane. Predicted to be located in Golgi membrane; endoplasmic reticulum membrane; and plasma membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and endoplasmic reticulum. Orthologous to human ZDHHC4 (zinc finger DHHC-type palmitoyltransferase 4).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU229865 True 807 lncRNA 0.38 2 10594229 10662463

Neighbor

gene id symbol gene type direction distance location
foxl3 LOC108273490,LOC108431962,LOC107731394,LOC107594215,LOC107584227,LOC107669190,LOC107734180 coding upstream 24540 10567499 ~ 10569689 (+)
fam20cb fam20cb,fam20c,LOC108274201,LOC105888715,LOC107699871,LOC107669229,LOC108432010,LOC107734234 coding upstream 29479 10532417 ~ 10564750 (+)
trrap trrap coding upstream 106762 10417901 ~ 10487467 (+)
bhlha15 bhlha15 coding upstream 235022 10355777 ~ 10359207 (+)
rsph10b rsph10b coding upstream 297706 10290457 ~ 10296523 (+)
grid2ipb grid2ip,LOC107584118,LOC108274076,LOC107669204,LOC107734213,LOC107731383 coding downstream 6717 10669180 ~ 10690023 (+)
LOC113527483 NA coding downstream 28085 10690548 ~ 10693499 (+)
lcmt1 lcmt1,LOC107734249,LOC107584116,LOC107731431,LOC107669194 coding downstream 51351 10713814 ~ 10720682 (+)
aqp8a.1 LOC108274292 coding downstream 59977 10722440 ~ 10724659 (+)
aqp8a.2 aqp8,LOC107692107,LOC107734187,LOC107594226 coding downstream 64230 10726693 ~ 10728551 (+)
G193972 NA non-coding upstream 243609 10350199 ~ 10350620 (+)
G193828 pvalb2,prv2,LOC108432016,LOC107669167,LOC107753417 non-coding upstream 257982 10324956 ~ 10336247 (+)
G193842 minpp1 non-coding upstream 367910 10224702 ~ 10226319 (+)
LOC117598497 NA non-coding upstream 445443 10144353 ~ 10148786 (+)
G193646 LOC108273498,LOC107727700 non-coding upstream 767365 9825427 ~ 9826864 (+)
G194113 NA non-coding downstream 48858 10711321 ~ 10712015 (+)
G194201 NA non-coding downstream 118200 10780663 ~ 10780884 (+)
LOC113527761 NA non-coding downstream 126304 10788767 ~ 10790017 (+)
G194276 NA non-coding downstream 302487 10964950 ~ 10965617 (+)
G194278 NA non-coding downstream 303175 10965638 ~ 10968033 (+)
arhgap23b LOC108273815 other upstream 902634 9655287 ~ 9691595 (+)
mrpl58 mrpl58 other upstream 1078613 9512784 ~ 9515616 (+)
trnaq-cug_15 NA other upstream 1080394 9513764 ~ 9513835 (+)
trnaq-cug_14 NA other upstream 1081598 9512560 ~ 9512631 (+)
trnaq-cug_13 NA other upstream 1081828 9512169 ~ 9512401 (+)
si:ch73-139e5.4 LOC108273417 other downstream 571127 11233590 ~ 11248213 (+)
trnaq-cug_16 NA other downstream 623734 11286197 ~ 11286268 (+)
tmem106a tmem106a other downstream 951436 11613899 ~ 11621269 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other downstream 1400345 12062808 ~ 12085359 (+)
LOC113527673 LOC108273669,LOC108273679 other downstream 1810216 12472679 ~ 12473983 (+)

Expression


Co-expression Network