G194278


Basic Information

Item Value
gene id G194278
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 10965638 ~ 10968033 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU230097
gttttattaatgtatctttgaaattatatgattattacaggtctagAAAGATGTGTAATCATTATATAAACTACAATTTGGGACAGCTAAGCTATGTTTAGTCCAATCTGATCCATCCTTGACAACTGATAGAGCATTTGTCTAACACAGCATTTCATCAGTCCTCTGTCCTTTCCTGTCCTaagacaaaacatttaaaagccCAGACAAATGAAGCGGACCTCCATCACTCAGTAGTCTCAAACAAGTCTTACCTGAGAGCCTATCTGTCCTTCCATTCAGCAAATACAACACTTCAGCATGACATGAGAGGTCACTAAAGGACTCAGTATCATTGCTACACCTCAAAAGGGATCTTCTTATGACAGGTCTAATCCTCACTATGAGCCAAATTATGCCTGGTGTAAAGAAAGAAGCTCTTGGCTACTGCTCTTGTAAAAACATAAGAAACATGAAAAGAGAGCCCTCTACTACAGTATCAAAGCTGCTGCTGTATCTAGGGCAGCAGACTGCTGTGTCCAAcatacttccttttttttggccCTGCTTTTCTACCACTCCGAAGTATCAGCTCCAACCATCAGCTACCACTTGATGTGATTAAGTGTACACTTATTCTGTGCTTTAGCCCTCTCTTTACAATAGCTTTGCTGGACTATAACGTGCTTGTAGAACTCTTGTCGTAAGGCAATCATTGCGTCCCTTAGCTTAAATTCCAGTGCATCCCTGTAAGTGAAATAACTTAGAGCTTTTAAGTAAAAAGAGAGAGTGCATACCAGAGTAAAGAACACCTAGGAGAGTTCGTGTGTCTGAATCTGTAAGCCCTGTTGGTTAGGGGATAAGGACCATGTACTGTGACAGATCCTTAATGTGCCACCAATCACTTGACTCCTACTAGAGGCGCACAGCAGGATACAGGACTGATCTATGGTGCTCAGTACACACTCAGAGAAGCACTCGTAACAGCTATGTAGCTCGGATTAACCTCTTTCTCTTACCAGACGAAGTATGAGTGCTGAAATACAGCCCATATGATCTGCTGTTTAACGTTGAGGTATGCTCTTAAAAGCACCTTGAAATCTTAAATCTCCTCTGTCTATACCTGTTCATTGCTATTTGCCTTGTTTGTGTCTAATAATGGCTCAACCCAAATCAGCATAATCACCATAATTTAGTGATAATTATATCAACTACAAACAAAAGGGCTGCTTAGAGCACAGCGCACAAATAGTTGTTCATTACAGAAACGGCTGTTGTTGGACTGCCTGCTGATTTTTTAGTGGTCTAGAATAGGCATTTCTCCCCATTATGTGCCATAAAGTTTGGATACAATGTGAAAAGATTTTCAGACACAGAACACCTAGTGTGGCATGGTCTAGGCGCTGTCTCCATCTCGCATCTGTCATCCGATTTCAGTCAACCAGTCGAAGCACACTGCATCTGTGCCTGCTTATTGCAAGTGGATCCATTCCAATAAATGGAATCCCTACAGAACAGCACACAGCATGCACAGATCATGTCCACACACCAGTGAGATTTGATTGCAATGTCAGCTGGTACCCATCTCAAACAGGACAGATCAGTTCTAGCACATTTAGATACCAGAGTGTCTGCACTGCTTTTAAAATGTGACCACCAGAATGTAAACatcactcagtgtgtgttttaacggAGATGGAGCCTTAGAGTATAAGCCATTTCAGTGCAGCattgtcagtgtcagtgtaatGAAGTGTCTCTATATGTGCCTGGAAATGCATCCCTAAATAATAATCAGTCATGTAAATAATCAGCGTAATGTTCCACTGTGGAGGAGAGCCTCCCTCTTTAACCCAAAGTTTGCTCCAAGGTTTTTCTAGGCAGACAGGCCCCAGTGCAGCAGATGATCTCTGAGATACGAACAAATTACCATCCAAATCTGGCTCATCTTCCAGTCCCAACTGTTTATGCAAATGACACATGTTGTAGTTACAAACGTGTCAGTTTCTCCTCCCCATCAAGCCTTTGTTTTGAGTGAGAGGTTAATGGGGAAACACTGCTGGTTGTTCACTTTTCTGGCTGACAGCCCATTCTGCCCATTTCGGAAATTCTTGCAGTCTGCTGTCGATCATAACATCCAAATATTTAATTGCTCCCTAGTAAATATTTAGCAGTCTCAATTTATTCATCACAAAGGCTCAGACACAGACTTAAATTCCCCCTGAGATTATAATCGTCATTAGAATTATCTTTCCATATGGTCTGAGACACAGATAAAGCATCTTAATCTAGGCAATATTTGGCATTCTAATGTCCTACCTGATTAAGTCTCAGTAATTCTTTAAGAGGTTACACTATTGGTCTCTATTAGTCCATGTAATTTGATTAAGGCAAGGTAATACTTTCCTTTAGTAATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU230097 True 2396 lncRNA 0.41 1 10965638 10968033

Neighbor

gene id symbol gene type direction distance location
shisa9a shisa9 coding upstream 27759 10912118 ~ 10937879 (+)
ubald1a ubald1,ubald1a,LOC107734217,LOC107669224,LOC107731421,LOC107554033,LOC103481145 coding upstream 144460 10812145 ~ 10821178 (+)
rhbdf1b LOC108274327,LOC108431996,LOC107734220,LOC107731426,LOC107584114,LOC107669219,LOC107692086,LOC107594190 coding upstream 186063 10754919 ~ 10779575 (+)
aqp8a.2 aqp8,LOC107692107,LOC107734187,LOC107594226 coding upstream 237087 10726693 ~ 10728551 (+)
aqp8a.1 LOC108274292 coding upstream 240979 10722440 ~ 10724659 (+)
maff maff,LOC107692071,LOC107554043,LOC107690056,LOC107584105,LOC107731405 coding downstream 128932 11096965 ~ 11100503 (+)
si:ch211-141o9.10 si:ch211-141o9.10,LOC108273827,LOC108431982,LOC103025298,LOC107690061,LOC107584211,LOC105888825,LOC107734185,LOC107584178 coding downstream 168824 11136857 ~ 11141931 (+)
cdc42ep1a cdc42ep1 coding downstream 182049 11150082 ~ 11158390 (+)
zc3h7bb LOC108274116,LOC108431941,LOC107690064,LOC107692064,LOC107554050,LOC107731396 coding downstream 218292 11186325 ~ 11200049 (+)
tefa LOC108273914 coding downstream 234523 11202556 ~ 11209717 (+)
G194276 NA non-coding upstream 21 10964950 ~ 10965617 (+)
LOC113527761 NA non-coding upstream 175621 10788767 ~ 10790017 (+)
G194201 NA non-coding upstream 184754 10780663 ~ 10780884 (+)
G194113 NA non-coding upstream 253623 10711321 ~ 10712015 (+)
G194091 zdhhc4,LOC108274079 non-coding upstream 303175 10594229 ~ 10662463 (+)
G194365 tnfrsf17 non-coding downstream 94131 11062164 ~ 11063682 (+)
G194293 NA non-coding downstream 125130 11093163 ~ 11096178 (+)
G194380 NA non-coding downstream 152285 11120318 ~ 11120550 (+)
G194360 tnrc6b,LOC105888746,LOC107734183,LOC107554046 non-coding downstream 167199 11135232 ~ 11206976 (+)
G194571 LOC108273766 non-coding downstream 410428 11378461 ~ 11379190 (+)
msrb1b msrb1b,LOC100705913,LOC102780437 other upstream 319091 10644826 ~ 10646547 (+)
arhgap23b LOC108273815 other upstream 1274043 9655287 ~ 9691595 (+)
mrpl58 mrpl58 other upstream 1450022 9512784 ~ 9515616 (+)
trnaq-cug_15 NA other upstream 1451803 9513764 ~ 9513835 (+)
trnaq-cug_14 NA other upstream 1453007 9512560 ~ 9512631 (+)
si:ch73-139e5.4 LOC108273417 other downstream 265557 11233590 ~ 11248213 (+)
trnaq-cug_16 NA other downstream 318164 11286197 ~ 11286268 (+)
tmem106a tmem106a other downstream 645866 11613899 ~ 11621269 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other downstream 1094775 12062808 ~ 12085359 (+)
LOC113527673 LOC108273669,LOC108273679 other downstream 1504646 12472679 ~ 12473983 (+)

Expression


Co-expression Network