G194360 (tnrc6b,LOC105888746,LOC107734183,LOC107554046)


Basic Information

Item Value
gene id G194360
gene name tnrc6b,LOC105888746,LOC107734183,LOC107554046
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 11135232 ~ 11206976 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU230183
GGCAGCGGCCACTGTTGCATTGGGGCTGTCTCCCCCACTGTTGCCTCCTCCCAGCAGCATGGAGGACAATGGTGGCTGGCCCCTCTTCAGTAGCACTTTGTGGTCCTGCTGGCAACGGAATCGAGGGGGCACTTCACGGGGCATGTAGCGCTGTGGGGCCTGGGTACTGGGGGAGGGCTGTCCGTTGGCCACCGCCGACCGCTTAGCATTGTTCCCACCCTGAGGGGGGGCACCAGCAGCCGGGGTGGCAGTGGAGGATGTTGTAGAAGAGATAGGGCCAGGGCTGGGAGAGACCGAGCTGGGGACGGCAGGAGATTGGGCAGATGGGGTCTTGGTCAGTTCTGGCACTgtgtttttttt

Function

symbol description
tnrc6b Predicted to enable nucleic acid binding activity. Predicted to be involved in gene silencing by miRNA and positive regulation of nuclear-transcribed mRNA poly(A) tail shortening. Predicted to act upstream of or within miRNA mediated inhibition of translation. Predicted to be active in P-body and nucleoplasm. Human ortholog(s) of this gene implicated in subserous uterine fibroid and uterine fibroid. Orthologous to human TNRC6B (trinucleotide repeat containing adaptor 6B).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU230183 True 360 lncRNA 0.63 2 11135232 11206976

Neighbor

gene id symbol gene type direction distance location
maff maff,LOC107692071,LOC107554043,LOC107690056,LOC107584105,LOC107731405 coding upstream 34729 11096965 ~ 11100503 (+)
shisa9a shisa9 coding upstream 197353 10912118 ~ 10937879 (+)
ubald1a ubald1,ubald1a,LOC107734217,LOC107669224,LOC107731421,LOC107554033,LOC103481145 coding upstream 314054 10812145 ~ 10821178 (+)
rhbdf1b LOC108274327,LOC108431996,LOC107734220,LOC107731426,LOC107584114,LOC107669219,LOC107692086,LOC107594190 coding upstream 355657 10754919 ~ 10779575 (+)
aqp8a.2 aqp8,LOC107692107,LOC107734187,LOC107594226 coding upstream 406681 10726693 ~ 10728551 (+)
aco2 aco2,LOC108273913,LOC107554054,LOC107692062,LOC107731401,LOC107734200,LOC107584097 coding downstream 9266 11216242 ~ 11225898 (+)
csdc2a csdc2,csdc2a,LOC101165181,LOC107584207,LOC105919973,LOC102235694 coding downstream 20769 11227745 ~ 11231747 (+)
rangap1b LOC108274340 coding downstream 58435 11265411 ~ 11272446 (+)
chadlb chadl,LOC108413512 coding downstream 66153 11273129 ~ 11278655 (+)
ep300a LOC108273944,LOC108413510 coding downstream 84077 11291053 ~ 11314637 (+)
G194380 NA non-coding upstream 14682 11120318 ~ 11120550 (+)
G194293 NA non-coding upstream 39054 11093163 ~ 11096178 (+)
G194365 tnfrsf17 non-coding upstream 71550 11062164 ~ 11063682 (+)
G194278 NA non-coding upstream 167199 10965638 ~ 10968033 (+)
G194276 NA non-coding upstream 169615 10964950 ~ 10965617 (+)
G194571 LOC108273766 non-coding downstream 171485 11378461 ~ 11379190 (+)
G194627 NA non-coding downstream 385916 11592892 ~ 11593091 (+)
G194623 psme3,LOC107582747,LOC107727296,LOC107669474,LOC107706898,LOC107666924 non-coding downstream 390554 11597530 ~ 11602441 (+)
G194748 NA non-coding downstream 511921 11718897 ~ 11719113 (+)
G194828 NA non-coding downstream 831527 12038503 ~ 12038728 (+)
msrb1b msrb1b,LOC100705913,LOC102780437 other upstream 488685 10644826 ~ 10646547 (+)
arhgap23b LOC108273815 other upstream 1443637 9655287 ~ 9691595 (+)
mrpl58 mrpl58 other upstream 1619616 9512784 ~ 9515616 (+)
trnaq-cug_15 NA other upstream 1621397 9513764 ~ 9513835 (+)
trnaq-cug_14 NA other upstream 1622601 9512560 ~ 9512631 (+)
si:ch73-139e5.4 LOC108273417 other downstream 26614 11233590 ~ 11248213 (+)
trnaq-cug_16 NA other downstream 79221 11286197 ~ 11286268 (+)
tmem106a tmem106a other downstream 406923 11613899 ~ 11621269 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other downstream 855832 12062808 ~ 12085359 (+)
LOC113527673 LOC108273669,LOC108273679 other downstream 1265703 12472679 ~ 12473983 (+)

Expression


Co-expression Network