G194571 (LOC108273766)


Basic Information

Item Value
gene id G194571
gene name LOC108273766
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 11378461 ~ 11379190 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU230438
TGTGTCTGTAACGGTTGTTGtttctgctgctgtttttgTGGCCTCTGCTGCTTCTTTTGATTGGCCTGTAGCTGCTTCTGCTGGCTCTGCTGGATAATGAGCTGTTGCAGCTTCTGTTGTTGCAGTGGCTGTGGCTGCTGCTGTTTTGACTGCTCTGACTGCTGTTTTGACTGCTCTGACTGCATTTGCTGCTGCTGCACCTGCAGTCGGTGAATCTGCTGCAGTTTGAGCAGTGTCTGCTGAGAACATTGTGTTTGCATCTTTCTCTGAGGTTGTGGCTGCGGTTCTGTTGACGTCTCCATGTCCTCCTTTGCTTCCTCTTTTACCTTCACACCCTCCCTGTTGGCCAGGGCTACTCCTTCAGTCTTGACTGTTATGTCCATTCCTTCTATGGTCGATCCACGCTTGCCCTGTTCAAGCTGTGAGCGGAGAGTCTCCACAAGCTGCTGCTTCTGCCTTAGCATGCGGGTCAGCTGCTCGATTTGCTTATCCTTCTCTTGCAGCATCTGGTCTTTGTCCAGCAGAGGTGCTGAGTGTGCCATTGGGCCTGCCATTAGAGGCTCCTGAGGCTGTGTAGCTGAAGAAGGGACAACAATGGGGTGGGACATACAGCATGTTGACTGCCCAAGAGGCTCCTCTTTAACTGGGGATGGATGTTCTGAGGATGGGTGCAGACTCAGCTGAGTGAGAGGTGAGCTAACCTATTTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU230438 True 709 lncRNA 0.52 2 11378461 11379190

Neighbor

gene id symbol gene type direction distance location
shisa8b LOC108273995 coding upstream 4193 11355205 ~ 11374268 (+)
desi1b LOC108273997 coding upstream 35377 11339017 ~ 11343084 (+)
ep300a LOC108273944,LOC108413510 coding upstream 63824 11291053 ~ 11314637 (+)
chadlb chadl,LOC108413512 coding upstream 99806 11273129 ~ 11278655 (+)
rangap1b LOC108274340 coding upstream 106015 11265411 ~ 11272446 (+)
gna13a LOC108273768,LOC108444258,LOC107660858,LOC107734232,LOC107601276,LOC107584085 coding downstream 34938 11414128 ~ 11420071 (+)
LOC113527352 amz2 coding downstream 41963 11421153 ~ 11424736 (+)
arsg arsg coding downstream 52731 11431921 ~ 11439228 (+)
si:dkey-220f10.4 LOC108273760,LOC108444253,LOC106579379,LOC105888833,LOC100695097 coding downstream 69468 11448658 ~ 11454978 (+)
stx4 stx4,LOC108274127,LOC103026481,LOC108444263 coding downstream 78162 11457352 ~ 11466041 (+)
G194360 tnrc6b,LOC105888746,LOC107734183,LOC107554046 non-coding upstream 171485 11135232 ~ 11206976 (+)
G194380 NA non-coding upstream 257911 11120318 ~ 11120550 (+)
G194293 NA non-coding upstream 282283 11093163 ~ 11096178 (+)
G194365 tnfrsf17 non-coding upstream 314779 11062164 ~ 11063682 (+)
G194278 NA non-coding upstream 410428 10965638 ~ 10968033 (+)
G194627 NA non-coding downstream 213702 11592892 ~ 11593091 (+)
G194623 psme3,LOC107582747,LOC107727296,LOC107669474,LOC107706898,LOC107666924 non-coding downstream 218340 11597530 ~ 11602441 (+)
G194748 NA non-coding downstream 339707 11718897 ~ 11719113 (+)
G194828 NA non-coding downstream 659313 12038503 ~ 12038728 (+)
G194989 NA non-coding downstream 760822 12140012 ~ 12140220 (+)
trnaq-cug_16 NA other upstream 92193 11286197 ~ 11286268 (+)
si:ch73-139e5.4 LOC108273417 other upstream 130248 11233590 ~ 11248213 (+)
msrb1b msrb1b,LOC100705913,LOC102780437 other upstream 731914 10644826 ~ 10646547 (+)
arhgap23b LOC108273815 other upstream 1686866 9655287 ~ 9691595 (+)
mrpl58 mrpl58 other upstream 1862845 9512784 ~ 9515616 (+)
tmem106a tmem106a other downstream 234709 11613899 ~ 11621269 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other downstream 683618 12062808 ~ 12085359 (+)
LOC113527673 LOC108273669,LOC108273679 other downstream 1093489 12472679 ~ 12473983 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other downstream 1579745 12958935 ~ 13021995 (+)
tcf7l2 tcf7l2 other downstream 2104111 13483301 ~ 13559085 (+)

Expression


Co-expression Network