G195016


Basic Information

Item Value
gene id G195016
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 12174394 ~ 12176119 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU230980
TCTTAATGCTAACTACGGTTGTGCCAATCCAACAAACTGAGTCCTGACACTGGCCTGAAACACTGGAACTCGATCAGACCCAGCTTTTTGCAAATCTGATCTACTAAAGTATTTTATGGCGTAAACACATATTGACTGACAACACAAATCATGACACAACCTGTCTTAAATCAGTGCTGACATTTTGTACAACCTGGCATCAGAAGCTTGCCGAGAGTCGGCTTAGTTACTGTGACAGTGTCAGTTTCAGCCAATATACAGTGATCGGACACTGGTATTATCACTAATGCTAACACATCATGAAAACTACTAACAATGGGATTGATGTCCAGGGTTGTTGTAACACAAATGATTACAGGTTGATTACAGGATGAAGAATCTTACCTGCAGCTTGTCCTGTCTTAGCCAGGAGAGTGCCAAGCTCCAGGATGCTCTGCTCTTTGACACGTACTGCCTCTTCATCATCCTGCTGAACATCTCGCCTGACTATTGAATGTAAAATATCGATAGAAGCGTTTCGATCCGTACTAATAAGAGACTGAGCTCTCTGAAACTCAACCACTGCCGCGGCTGCCATCTTCCCTATTCAAAACCTAC

Function

GO: NA

KEGG:

id description
ko05322 Systemic lupus erythematosus
ko05034 Alcoholism

RNA

RNA id representative length rna type GC content exon number start site end site
TU230980 True 597 lncRNA 0.43 2 12174394 12176119

Neighbor

gene id symbol gene type direction distance location
LOC113527660 LOC108274136,LOC107754112,LOC107743783,LOC107691214,LOC107566616,LOC107568947,LOC107689267 coding upstream 31651 12141560 ~ 12142743 (+)
cacna1g cacna1g coding upstream 141041 11857394 ~ 12033353 (+)
spata20 spata20,LOC107679345,LOC104963383,LOC107676339 coding upstream 342730 11795917 ~ 11831664 (+)
etv4 etv4,LOC107706904,LOC107552771 coding upstream 390246 11759981 ~ 11784148 (+)
meox1 meox1,LOC107577625 coding upstream 442406 11725403 ~ 11731988 (+)
cdk5r1b cdk5r1,LOC108426451,LOC103047129 coding downstream 2904 12179023 ~ 12185038 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 coding downstream 93566 12269685 ~ 12317104 (+)
tbx21 tbx21 coding downstream 172841 12348960 ~ 12360643 (+)
pnpo pnpo,LOC107565739,LOC102778316 coding downstream 202359 12378478 ~ 12383567 (+)
cdk5rap3 cdk5rap3,LOC107754106 coding downstream 214674 12390793 ~ 12398133 (+)
G195002 NA non-coding upstream 29187 12145001 ~ 12145207 (+)
G194989 NA non-coding upstream 34174 12140012 ~ 12140220 (+)
G194828 NA non-coding upstream 135666 12038503 ~ 12038728 (+)
G194748 NA non-coding upstream 455281 11718897 ~ 11719113 (+)
G194623 psme3,LOC107582747,LOC107727296,LOC107669474,LOC107706898,LOC107666924 non-coding upstream 571953 11597530 ~ 11602441 (+)
G195047 NA non-coding downstream 72941 12249060 ~ 12249755 (+)
G195083 NA non-coding downstream 194937 12371056 ~ 12371285 (+)
G195084 NA non-coding downstream 197891 12374010 ~ 12374280 (+)
LOC117598562 NA non-coding downstream 275774 12451893 ~ 12453678 (+)
G195225 NA non-coding downstream 374015 12550134 ~ 12550360 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other upstream 89035 12062808 ~ 12085359 (+)
tmem106a tmem106a other upstream 553125 11613899 ~ 11621269 (+)
trnaq-cug_16 NA other upstream 888126 11286197 ~ 11286268 (+)
si:ch73-139e5.4 LOC108273417 other upstream 926181 11233590 ~ 11248213 (+)
msrb1b msrb1b,LOC100705913,LOC102780437 other upstream 1527847 10644826 ~ 10646547 (+)
LOC113527673 LOC108273669,LOC108273679 other downstream 296560 12472679 ~ 12473983 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other downstream 782816 12958935 ~ 13021995 (+)
tcf7l2 tcf7l2 other downstream 1307182 13483301 ~ 13559085 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other downstream 1837454 14013573 ~ 14034143 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other downstream 2111240 14287359 ~ 14324281 (+)

Expression


Co-expression Network