G195083


Basic Information

Item Value
gene id G195083
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 12371056 ~ 12371285 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU231048
GTGAGTGACGAGAGGATGCAGTGCTGCTGCTCCGGGAGTGAGTGGGCTTTTGCCATCCAGCAGATGATCTGTCCAGTCCAGTCTGAAACTGGCTGTGGTCTGGCATCAGTCCATAGGGCTCCATACCGAAAATGCTCTCTGCACTTCTTGGTTGAActcttaaatgtaaatgtaaatgtactctGCTCTAGATAGTCATTGTGGGCTAGAGGACAACATGtctgaaaagc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU231048 True 230 lncRNA 0.49 1 12371056 12371285

Neighbor

gene id symbol gene type direction distance location
tbx21 tbx21 coding upstream 10413 12348960 ~ 12360643 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 coding upstream 53952 12269685 ~ 12317104 (+)
cdk5r1b cdk5r1,LOC108426451,LOC103047129 coding upstream 186018 12179023 ~ 12185038 (+)
LOC113527660 LOC108274136,LOC107754112,LOC107743783,LOC107691214,LOC107566616,LOC107568947,LOC107689267 coding upstream 228313 12141560 ~ 12142743 (+)
cacna1g cacna1g coding upstream 337703 11857394 ~ 12033353 (+)
pnpo pnpo,LOC107565739,LOC102778316 coding downstream 7193 12378478 ~ 12383567 (+)
cdk5rap3 cdk5rap3,LOC107754106 coding downstream 19508 12390793 ~ 12398133 (+)
nfe2l1b nfe2l1,nfe2l1b,LOC107565927 coding downstream 36068 12407353 ~ 12415790 (+)
phkg2 phkg2,LOC107743765,LOC107675026 coding downstream 51465 12422750 ~ 12430535 (+)
rnf40 rnf40,LOC108273672,LOC107565773,LOC107754088,LOC107675023 coding downstream 63250 12434535 ~ 12446996 (+)
G195047 NA non-coding upstream 121301 12249060 ~ 12249755 (+)
G195016 NA non-coding upstream 194937 12174394 ~ 12176119 (+)
G195002 NA non-coding upstream 225849 12145001 ~ 12145207 (+)
G194989 NA non-coding upstream 230836 12140012 ~ 12140220 (+)
G194828 NA non-coding upstream 332328 12038503 ~ 12038728 (+)
G195084 NA non-coding downstream 2725 12374010 ~ 12374280 (+)
LOC117598562 NA non-coding downstream 80608 12451893 ~ 12453678 (+)
G195225 NA non-coding downstream 178849 12550134 ~ 12550360 (+)
G195287 NA non-coding downstream 271983 12643268 ~ 12643526 (+)
G195301 NA non-coding downstream 286820 12658105 ~ 12658323 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other upstream 285697 12062808 ~ 12085359 (+)
tmem106a tmem106a other upstream 749787 11613899 ~ 11621269 (+)
trnaq-cug_16 NA other upstream 1084788 11286197 ~ 11286268 (+)
si:ch73-139e5.4 LOC108273417 other upstream 1122843 11233590 ~ 11248213 (+)
msrb1b msrb1b,LOC100705913,LOC102780437 other upstream 1724509 10644826 ~ 10646547 (+)
LOC113527673 LOC108273669,LOC108273679 other downstream 101394 12472679 ~ 12473983 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other downstream 587650 12958935 ~ 13021995 (+)
tcf7l2 tcf7l2 other downstream 1112016 13483301 ~ 13559085 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other downstream 1642288 14013573 ~ 14034143 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other downstream 1916074 14287359 ~ 14324281 (+)

Expression


Co-expression Network