G195301


Basic Information

Item Value
gene id G195301
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 12658105 ~ 12658323 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU231306
TAAGTCCTGGTTCCGCTTCAACCCTGATCAGTGTTTAccgaaaatgaatgaatgaataaaggaaGCCTACTTGCTATGCCCATATAGTGGGAATGCTTAATGCTATCTTTCTCCTCTCCATAAAGCTTTTGGGACTAGTTGGATTATGAGTTGTTGATGGCTAAAGGCTTCACACATGCCTCATTTTGtcaacatttaattaaatctggAACATGGTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU231306 True 219 lncRNA 0.39 1 12658105 12658323

Neighbor

gene id symbol gene type direction distance location
bms1 bms1,LOC107689949,LOC107675025 coding upstream 42887 12596373 ~ 12615218 (+)
mxtx2 LOC108273977 coding upstream 61883 12594495 ~ 12596222 (+)
adgra1a LOC108273515 coding upstream 82561 12563497 ~ 12575544 (+)
gabrz gabrz,LOC108273489,LOC108426470,LOC107675029,LOC107565977,LOC107754081,LOC107563789,LOC107677887,LOC107743757 coding upstream 113389 12522935 ~ 12544716 (+)
valopb valopb,LOC108273592,LOC108426422,LOC103038101,LOC107754082 coding upstream 155236 12495668 ~ 12502869 (+)
gfra1b gfra1,gfra1b,LOC107707958,LOC107581544,LOC107755550,LOC107689950,LOC107702444 coding downstream 153324 12811647 ~ 12837383 (+)
afap1l2 afap1l2 coding downstream 367308 13025631 ~ 13056775 (+)
ccdc186 ccdc186,LOC107755417,LOC107689962 coding downstream 432863 13091186 ~ 13113005 (+)
dclre1a dclre1a coding downstream 487557 13145880 ~ 13155997 (+)
LOC113527338 dclre1a coding downstream 508763 13167086 ~ 13177922 (+)
G195287 NA non-coding upstream 14579 12643268 ~ 12643526 (+)
G195225 NA non-coding upstream 107745 12550134 ~ 12550360 (+)
LOC117598562 NA non-coding upstream 204427 12451893 ~ 12453678 (+)
G195084 NA non-coding upstream 283825 12374010 ~ 12374280 (+)
G195083 NA non-coding upstream 286820 12371056 ~ 12371285 (+)
G195512 NA non-coding downstream 186002 12844325 ~ 12844561 (+)
LOC113527319 NA non-coding downstream 405541 13063864 ~ 13066622 (+)
G195839 NA non-coding downstream 808442 13466765 ~ 13466983 (+)
G195847 NA non-coding downstream 856353 13514676 ~ 13517886 (+)
G195857 NA non-coding downstream 960341 13618664 ~ 13618939 (+)
LOC113527673 LOC108273669,LOC108273679 other upstream 184122 12472679 ~ 12473983 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other upstream 572746 12062808 ~ 12085359 (+)
tmem106a tmem106a other upstream 1036836 11613899 ~ 11621269 (+)
trnaq-cug_16 NA other upstream 1371837 11286197 ~ 11286268 (+)
si:ch73-139e5.4 LOC108273417 other upstream 1409892 11233590 ~ 11248213 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other downstream 300612 12958935 ~ 13021995 (+)
tcf7l2 tcf7l2 other downstream 824978 13483301 ~ 13559085 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other downstream 1355250 14013573 ~ 14034143 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other downstream 1629036 14287359 ~ 14324281 (+)
anapc16 anapc16,cj104 other downstream 4197366 16855689 ~ 16863495 (+)

Expression


Co-expression Network